Erythrobacter sp. SDW2: LY632_01240
Help
Entry
LY632_01240 CDS
T10668
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
erys Erythrobacter sp. SDW2
Pathway
erys03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
erys00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LY632_01240 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erys03021
]
LY632_01240 (rpoB)
03400 DNA repair and recombination proteins [BR:
erys03400
]
LY632_01240 (rpoB)
Enzymes [BR:
erys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LY632_01240 (rpoB)
Transcription machinery [BR:
erys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LY632_01240 (rpoB)
DNA repair and recombination proteins [BR:
erys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LY632_01240 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UIP07054
LinkDB
All DBs
Position
complement(254760..258941)
Genome browser
AA seq
1393 aa
AA seq
DB search
MASKAKTPTALTKASGTAKRRIRKIFGDIHEVVQMPNLIEVQRESYEHFLRSDKSTGYVS
GLEKTLRSVFPIRDFAGTAELDFVHYELEDPKYDTTECRQRGITYAAPMKVTLRLIVFEV
DTETETRSVLDIKEQDVYMGDMPLMTENGTFIINGTERVIVSQMHRSPGVLFDHDRGKTH
SSGKLLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLFALGLDAEDILGYFY
NTVTWDRAKDGWKIPFHAEAWRNAKPAFPLVDAKTGEEVFPAGQKISPRAANKAAKDGLT
TLLLPTEEIFARYAANDMIDESTGRIYIEAGDEVGPDHLEALDAAGFDKIELLDIDHVGI
GPWIRNTLKADKAENRDEGLEAIYKVMRPGEPPTKETAEALFEGLFFDGERYDLSAVGRV
KLNMRLDLDAEDTVTTLRKEDILAVVKELVGLKDGKGEVDDIDNLGNRRVRSVGELLENQ
YRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSE
VTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNK
YGFIETPYRVVKDGKVTSEVIYLSAMEEQKHTVAQASAELNDDGSFVEELISARQNGDNL
MAPRETITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPWVGTG
MEETVARDSGAAITATRGGVVDQVDASRIVIRAIGDVEPGQSGVDIYSLQKFQRSNQSTC
INQRPLVKVGETVEAGDIIADGPSTDLGELALGKNSLVAFMPWNGYNYEDSILISERIVK
DDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILV
GKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGTSGTIVDVRIFNRHGIEVDDR
TRAIQQEEIERLRKDSQDERAILNRATYNRLRDMLLGQTASAAPKGIKKGTEITEALLEE
VERHEWFKFAVADDTRQSQIEAIKAQYDEAVKGIDEKFEDRKEKLERGDELAPGVLKMVK
VFVAIKRKLQPGDKMAGRHGNKGVISRILPVEDMPFLEDGTPVDLVLNPLGVPSRMNVGQ
IFETHLGFAARGLGQQIKVALDEWRAANPNPEAGAPPEAVKAKLQEIYGDRYAEDIASRG
TTEIVELASNLTAGVPMGTPVFDGARESDVTAQLQAAGIDSDGQSVLYDGRTGEAFDRKV
TVGIIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY
TLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSLTDG
TDEDGDDMQIAAE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaaggcgaaaaccccgacggcactgaccaaggcttcgggcacggcgaagcgg
cgcatccgcaagatcttcggcgacatccacgaagtggtgcagatgccgaacctgatcgag
gttcagcgcgaaagctacgaacacttcctgcgttcggacaagagcacgggctatgtctcg
ggcctcgagaagacgctgcgctcggtgttcccgatccgcgactttgccggcacagccgaa
ctcgacttcgtgcactacgaactcgaagatcccaagtacgacaccaccgagtgtcgccag
cgcggcatcacctatgccgccccgatgaaagtcacgctgcgcctgatcgtgttcgaagtc
gataccgagacggaaacccgctcggtgctcgatatcaaggagcaggacgtctacatgggc
gacatgccgctcatgacggagaacggcaccttcatcatcaacggaaccgagcgtgtcatc
gtgtcgcagatgcaccgttcgccgggtgtgctgttcgaccatgaccggggcaagacccac
agctcgggcaagctgctgtttgccgcccgcgtcatcccctaccgcggttcgtggctcgat
ttcgaattcgacgccaaggacatcgtcaacgtccgcatcgaccgcaagcgcaagctgccg
gtcacctcgctgctgttcgcgctcggtctcgatgccgaagatatcctcgggtacttctac
aacaccgtcacctgggaccgtgccaaggacgggtggaagataccgttccacgccgaagcc
tggcgcaacgccaagccggctttcccgctggtcgatgccaagaccggcgaggaagtgttc
cccgccggccagaagatctcgccgcgtgccgccaacaaggcggccaaggatggcctcacc
accctgctgctgccgaccgaggaaatcttcgcgcgctatgccgcgaacgacatgatcgac
gagtcgaccggtcggatctacatcgaagccggtgacgaagtcggcccggaccacctggag
gcgctcgacgctgccgggttcgacaagatcgagctgctcgacatcgaccacgtcggcatc
ggcccgtggatccgcaacacgctcaaggccgacaaggccgagaaccgtgacgaaggcctc
gaggcgatctacaaggtcatgcgcccgggcgaaccgccgaccaaggaaaccgccgaagcc
ctgttcgaaggcctgttcttcgatggcgaacgctatgacctttcggccgttggccgcgtc
aagctcaacatgcgtctcgacctcgacgccgaggacaccgttaccacgctgcgcaaggaa
gacatcctggcggtggtgaaggaactcgtcggcctcaaggacggcaagggtgaagtcgac
gacatcgacaacctcggcaaccgccgggtccgttcggtgggcgagctgctggaaaaccag
taccgcgtcggcctgctgcgcatggaacgtgcggtcaaggaacgcatgagctcggtcgat
gtgtcgaccgtgatgccgaacgacctcatcaacgccaagccggccgtggccgcggtgcgc
gagttcttcggctccagccagctgtcgcagttcatggaccagaccaacccgctgtccgaa
gtcacccacaagcgccgcgtctcggcgctcgggccgggcggtctcacccgcgagcgtgcc
ggcttcgaagtccgcgacgttcacccgacgcactatggccgcatctgcccgatcgaaacg
ccggaaggcccgaacatcggtctgatcaactcgctcagcacctttgcccgcgtcaacaaa
tacggcttcatcgaaacgccgtaccgcgtggtcaaggacggcaaggtcaccagcgaagtg
atctacctttcggccatggaagagcagaagcacaccgtggcgcaggcttcggccgagctc
aacgatgacggctcgttcgtcgaggaactgatctcggcacgccagaacggcgacaacctg
atggcgccgcgcgaaaccatcacgctgatggacgtctcgcccaagcagctcgtctcggtc
gccgcctcgctcattccgttcctcgaaaacgatgacgccaaccgcgcgctgatgggctcg
aacatgcagcgccaggcggtgccgctggtcaaggccgaggcaccctgggtcggcaccggc
atggaagaaaccgtcgcccgcgattcgggtgcggcgatcaccgccacccgcggcggcgtg
gtcgaccaggtcgacgccagccgtatcgttatccgtgcgatcggcgatgtcgaacccggc
cagtcgggcgtcgacatctacagcctgcagaagttccagcgttcgaaccagtcgacctgc
atcaaccagcgcccgctggtgaaggtcggcgaaacggtcgaggccggtgacatcatcgcc
gacggcccctcgaccgatctcggtgagctggcactgggcaagaacagcctcgtcgctttc
atgccctggaacggctacaactacgaagactcgatcctgatcagcgaacgcatcgtcaag
gacgacgtcttcacctcgatccacatcgaggagttcgaagtcatggcccgcgacaccaag
ctcgggccggaagacatcacccgcgacatccccaacgtcggcgaggaagcgctgcgcaac
ctcgacgaagcggggatcgtctacatcggtgccgaagtgcatccgggcgacattctggtc
ggcaagatcacgcccaagggcgaaagcccgatgacgccggaagaaaagctgctgcgcgcc
atcttcggcgaaaaggccagcgacgtgcgcgacacctcgctccgcctgccgccgggcacc
agcggcaccatcgtcgacgtgcgcatcttcaaccgtcacgggatcgaggtcgacgaccgt
acccgtgcgatccagcaggaagagatcgaacgtctgcgcaaggacagccaggacgaacgc
gcgatcctcaaccgggcgacctacaaccgcctgcgcgacatgctgctcggccagaccgct
tcggcggcgccgaagggcatcaagaagggcacggaaattaccgaggccctgctggaggaa
gtcgagcgccacgaatggttcaagttcgcggtcgccgacgacacccgtcagagccagatc
gaagcgatcaaggcccagtatgacgaggctgtgaagggcatcgacgagaagttcgaggac
cggaaggaaaagctcgaacgcggcgacgaactcgccccgggcgtgctcaagatggtcaag
gtcttcgttgccatcaagcgcaagctgcagccgggcgacaagatggccggccgtcacggc
aacaagggtgtgatttcgcgcatcctgccggtcgaggacatgccgttcctcgaagacggg
accccggtcgatctcgtgctcaacccgctcggcgtgccttcgcgcatgaacgtcgggcag
atcttcgaaacccacctgggcttcgccgcccgcggtctgggccagcagatcaaggtggcg
ctcgacgagtggcgcgcagccaaccccaatcccgaagcgggcgctccgcccgaagcggtc
aaggccaagctgcaggaaatctacggcgatcgctatgccgaggatatcgcctcgcgcggg
acgaccgaaatcgtcgagctcgcttcgaacctcaccgccggtgttccgatgggcaccccg
gtgttcgacggcgcgcgtgaaagcgacgtgaccgcgcagctgcaggctgccgggatcgac
agcgacggccagtcggtgctctatgacggccgcaccggtgaggccttcgaccgcaaggtg
accgtgggcatcatctacatgctcaagctgcaccacctggtcgacgacaagatccacgcc
cgttcgatcggcccctactcgctcgtcacccagcagccgctgggcggcaaggcgcagttc
ggtggccagcgcttcggagaaatggaagtctgggcactgcaggcctacggcgcggcctac
acgctgcaggaaatgctgacggtgaagtccgacgacgtggtcggccgcaccaaggtctac
gaagcgatcgtcaaaggcgacgacaccttcgaggccggcattcccgaaagcttcaacgtg
ctcgtcaaggaaatgcgcagcctcggcctcaacgtcgaactgtcgtcgctcaccgacggc
accgacgaggacggcgacgacatgcagattgctgccgagtaa
DBGET
integrated database retrieval system
