Erythrobacter sp. JK5: KDC96_14610
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Entry
KDC96_14610 CDS
T10266
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eryt Erythrobacter sp. JK5
Pathway
eryt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eryt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KDC96_14610 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eryt03021
]
KDC96_14610 (rpoB)
03400 DNA repair and recombination proteins [BR:
eryt03400
]
KDC96_14610 (rpoB)
Enzymes [BR:
eryt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KDC96_14610 (rpoB)
Transcription machinery [BR:
eryt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KDC96_14610 (rpoB)
DNA repair and recombination proteins [BR:
eryt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KDC96_14610 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF6888
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
QUL37558
LinkDB
All DBs
Position
2992421..2996629
Genome browser
AA seq
1402 aa
AA seq
DB search
MATKAKAPKASGNVRSRKAQGTAKKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSNKE
IDYVSGLEKTLRSVFPIRDFAGTAELDFVHYELEEPKYDTTECRQRGITYAAPMKVTLRL
IVFEVDQETETRSVLDIKEQDVYMGDMPLMTENGTFIINGTERVIVSQMHRSPGVLFDHD
RGKTHSSGKLLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLDSEEI
LHFFYDTVVWERAKDGWKIPFTPEAWRGMKPAFALVDAKTGEEVFPAGQKISPRAANKAA
KDGLTDLLLPTEEIVSRYASRDMIDESTGRIYIEAGDEITLEHIETFDNAGIDTLELLDI
DEINTGPWIRNTLKVDKAENRDEGLEAIYKVMRPGEPPTKETAEALFEGLFFDGERYDLS
AVGRVKLNMRLGLDAEDTVTTLRKEDILAVVKELVGLKDGKGEVDDIDNLGNRRVRSVGE
LLENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQT
NPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASF
SRVNKYGFIETPYRKVEDNKVTGDVIYLSAMEEQKHTVAQASAELNADGTFVEELISARQ
AGDNLMAPNDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAP
WVGTGMEETVARDSGAAIAAKRGGIVDQVDATRIVIRAIGDVEPGRSGVDIYTLQKFQRS
NQNTCINQRPLVKVGDVIEAGDIIADGPSTDLGELALGKNSLVAFMPWNGYNYEDSILIS
ERIVKDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHP
GDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGI
EIDDRTRAIQNEEIERLRKDAADERNILNRATYNRLKDMLMGQTASAAPKGVKKGTKIDD
ELLEGVERHEWFKFAVADDNRQAQIEAIKAQYDEAVAGIDAKFEDRKEKLERGDELAPGV
LKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPVEDMPFLEDGTPVDIVLNPLGVPSR
MNVGQIFETHLGFAARGLGMEIADKLEEWKAANPGAAEDYSKTKPPAAVVERLKDVYGEQ
YHEDIDSRSTGEIVELATNISAGVPMGTPVFDGAREPDVTDMLIKAGIDSSGQSVLYDGR
TGEAFDRKVTVGIIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLN
VELKSLSDGEEDEDDQWPEAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggcgaaggctccgaaggcatcgggcaacgtccgcagccgcaaggcacag
ggcaccgcgaagaagcgcatccgcaagattttcggcgacatccacgaagtcgtgcagatg
ccgaacctgatcgaggtgcagcgcgagagctacgaacagttcctgcgctcgaacaaggag
atcgattacgtctccggtctcgaaaagaccctgcgcagcgtcttcccgatccgcgacttc
gccggcaccgccgagctcgacttcgtccactacgagctcgaagaaccgaaatacgacacc
accgagtgtcgccagcgcggcattacctatgccgccccgatgaaggtcacgctgcgcctg
atcgtgttcgaagtcgatcaggaaaccgaaacccgttcggtcctcgatatcaaggagcag
gacgtctacatgggcgacatgccgctcatgaccgagaacggcaccttcatcatcaacggc
accgagcgcgtgatcgtgtcgcagatgcaccgttcgccgggtgtgctgttcgaccatgac
cgtggcaagacccactcttcgggcaagctgctgttcgccgcgcgggtgatcccctatcgc
ggttcgtggctcgattttgaattcgacgccaaggacatcgtcaatgtccggatcgaccgc
aagcgcaagctgccggtcaccgcgctgctttacgcgctgggcctagacagcgaggaaatc
ctgcatttcttctacgacacggtcgtgtgggagcgcgccaaggacggctggaagattccg
ttcacgcccgaagcatggcgtggcatgaagccggccttcgcgctggtcgatgccaagacc
ggcgaagaggttttcccggcaggccagaagatcagcccgcgcgccgccaacaaggccgcc
aaggacggcctgaccgatctgctgctgccgaccgaagagatcgtcagccgctacgcctcg
cgcgacatgatcgacgaaagcaccggtcgcatctacatcgaagccggtgacgagatcacg
ctcgagcatatcgaaaccttcgacaatgccgggatcgacactctcgaactgctcgatatc
gacgagatcaacaccggcccgtggattcgcaacacgcttaaggtcgacaaggccgagaac
cgcgacgagggcctcgaagccatctacaaggtgatgcgtccgggcgaaccgccgaccaag
gaaactgccgaggcgctgttcgaaggcctgttcttcgacggcgagcgttacgacctgtcg
gccgtcggccgcgtcaagctcaacatgcggctcggcctcgatgccgaagacaccgtgacc
accctgcgcaaggaagacattctcgccgtggtcaaggagctggtcggcctcaaggacggc
aagggcgaagtcgacgacatcgacaacctcggcaatcgccgtgtgcgatcggtcggcgag
ctgctcgaaaaccagtaccgtgtcggcctgctgcgcatggagcgtgcagtcaaagaacgc
atgtcttcggttgacgtatcgaccgtcatgccgaacgacctgatcaatgcgaaaccggct
gtggccgcggtgcgtgaattcttcggctcttcgcagctgtcgcagttcatggaccagacc
aacccgctgtcggaagtcacccacaagcgccgcgtttcggcgcttggtccgggcggcctt
acccgtgagcgcgcgggcttcgaagtccgcgacgtccacccgacgcactacggtcgcatc
tgcccgatcgaaacgcccgaaggtccgaatatcggcctgatcaactcgctggcctcgttc
agccgggtcaacaagtacggcttcatcgaaaccccgtaccgcaaggtcgaggacaacaag
gtcaccggcgacgtgatctacctgtccgcgatggaagagcagaagcacaccgttgcgcag
gcatcggccgagctgaacgccgacggcacgttcgtcgaagagctgatctcggcgcgccag
gcgggtgacaacctgatggcgccgaacgaccagatcacactgatggacgtgtcgccgaaa
cagctcgtttcggtcgcagcctcgctgatcccgttccttgagaacgatgacgccaaccgc
gcgctgatgggctcgaacatgcagcgccaggcggtgccgctggtcaaggccgaggcaccg
tgggtcggcaccggcatggaagagaccgtggcgcgcgacagcggcgcggcgattgcggcc
aagcgcggcggcatcgtcgaccaggtcgacgccacccgcatcgtgatccgtgcaatcggc
gatgtcgaacccggccgttcgggcgtcgacatctacacccttcagaagttccagcgttcg
aaccagaacacctgcatcaaccagcgcccgctggtgaaggtgggcgatgtgatcgaagcc
ggtgacattattgccgacggtccctcgaccgatctcggcgagctggcgctgggcaagaac
agcctcgtcgcgttcatgccgtggaacggctacaactacgaggactcgatcctgatctcc
gaacgcatcgtgaaggacgacgtgttcacctcgatccacatcgaggaattcgaggtcatg
gcccgcgacaccaagctcgggccggaagacatcacccgcgacattcccaacgtcggcgag
gaagccctgcgcaacctcgacgaagcggggatcgtctatatcggcgccgaagtgcacccg
ggcgatatcctggtcggcaagatcacgccgaagggcgaaagcccgatgacgccggaagaa
aagctgctccgcgcgatcttcggcgagaaagccagcgacgtgcgcgacacctcgctgcgt
ctgccgccgggcgtggccgggacgatcgtcgaggtccgggtgttcaaccgccacgggatc
gagatcgacgaccgtacgcgggcgatccagaacgaggaaatcgagcgcctgcgcaaggac
gcggcggatgaacgcaacatcctcaaccgggcgacctacaaccgcctcaaggacatgctg
atgggccagaccgcctcggctgctccgaagggggtcaagaagggtaccaagatcgacgac
gagctgctcgaaggcgtggagcgccacgagtggttcaagttcgcggtcgccgacgacaac
cgtcaggcgcagatcgaagcgatcaaggcgcagtatgacgaagccgtcgccgggatcgac
gccaagttcgaggaccgcaaggaaaagctcgaacgcggcgacgagctcgctccgggcgtg
ctcaagatggtcaaggtgttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatg
gccgggcgtcacggcaacaagggcgtgatttcgcggattctgccggtcgaggacatgccg
ttcctcgaagacgggaccccggtcgatatcgtgctcaacccgctgggcgtgccttcgcgc
atgaatgttggccagatcttcgagacgcatctcggctttgccgcgcgcgggctcgggatg
gagatcgccgacaagctcgaagagtggaaggcggccaacccgggcgcagccgaggactac
agcaagaccaagccgccggctgccgtcgtggagcgcctgaaagacgtctacggcgagcag
tatcacgaggacatcgacagccgttcgaccggcgagatcgtggagctggcgacgaatatc
agcgcgggcgtgccgatgggcacgccggtgttcgatggcgcgcgcgaacccgacgtcacc
gacatgctgatcaaggcggggatcgattcctcgggccagtcggtgctctatgacgggcgc
accggcgaggcgttcgaccgcaaggtgaccgtgggcatcatctacatgctcaagctgcac
cacctggtcgacgacaagatccacgcccgttcgatcggtccgtactcgctcgtcacccag
cagccgctaggcggcaaggcgcagttcggcggtcagcgcttcggcgagatggaggtttgg
gccctgcaggcctacggcgcagcctacaccctgcaggagatgctcaccgtcaagtcggac
gacgtggtcggccggaccaaggtctacgaagcgatcgtcaagggcgacgacaccttcgaa
gcgggcattccggagagcttcaacgtgctcgtcaaggaaatgcgctcgctgggcctcaac
gtcgaactcaagtcgctcagcgacggcgaggaagacgaggacgaccagtggccggaggca
gcggagtaa
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integrated database retrieval system
