Egibacter rhizosphaerae: ER308_18000
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Entry
ER308_18000 CDS
T05860
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
erz
Egibacter rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
erz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
erz03016
]
ER308_18000 (thpR)
Enzymes [BR:
erz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
ER308_18000 (thpR)
Transfer RNA biogenesis [BR:
erz03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
ER308_18000 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QBI21277
UniProt:
A0A411YJA3
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All DBs
Position
3912671..3913357
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AA seq
228 aa
AA seq
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MTDETGAGSRMSAGDARAADAGRSPGAERAGAERGGAERAGAERGGTERLFVGVLVGEEA
ARDLDEALAPLRREHSRLTWIARERWHLTLAFLGEVDPDTAAAADLAVEEAAGVHPPMTV
ALDGSLGRFGRGVLWAGIVASSELDALAADVRSRLTARGVGFDDKPFHAHLTVARPPRRG
RLPSGITDGFAGPTTRWTLEAVHVVRSERGRGGGRYVTRSRSPLAGPA
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgagacgggtgcgggttcgcggatgagcgcgggggatgcgcgcgccgccgac
gcgggccggtcgccaggcgccgagcgggccggggccgagcggggtggggccgagcgggcc
ggggccgagcggggtgggaccgagcgactgttcgtcggcgtgctcgtgggggaggaggcc
gcccgggacctggacgaggcgctcgcgcccctgcgccgcgagcactcccgactgacctgg
atcgcccgcgaacgatggcacctcacgctcgcgttcctcggcgaggtcgatcccgacacc
gcggcggccgccgatctcgcggtcgaggaggccgcgggggtgcacccaccgatgaccgtg
gcgttggacggctcgctcgggcgtttcggtcggggcgtgctgtgggccgggatcgtggcc
tcgtcggagctggatgcgctcgccgccgacgtgcgctcccgattgacggcccgtggggtg
ggcttcgacgacaagccctttcatgcgcacctgaccgttgcccgcccgccccggcgcggt
cggctgccgtccgggatcaccgacgggttcgcgggaccgacgacccgctggacgctggag
gccgtgcacgtggtgcgctccgagcgcggtcgaggcgggggtcgctacgtgactcgatcg
cggtccccgctggccggtcccgcctga
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