Etheostoma spectabile (orangethroat darter): 116693360
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Entry
116693360 CDS
T08457
Symbol
cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116693360 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116693360 (cnot1)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116693360 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116693360 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
116693360
NCBI-ProteinID:
XP_032378170
LinkDB
All DBs
Position
8:complement(22237347..22263496)
Genome browser
AA seq
2382 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LQLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDSKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
LGTGSVLKTILTMVANCSNVMNKARQPPPGVMPKGRAPSTSTLXAISPVQMDTLSGIGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNTNPSTPFGGIGSLSSQLPGPL
GTGIGSGIGSSLGMPPVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQTQSQ
QPGVPKAPQPGQPSTLVTTATTTTTVAKTPTITRPTPGIFKKDVPPSINTTNIDTLLVAT
DQTERIVEPPETVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE
PNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI
TLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTMAI
MNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKSLEEQLSAPKKE
AKPPEEMLPVSTTDFVPFAAPPSTPAATTTTCTTTGPPTPQFSYHDINVYALAGLAPHIN
ITVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEES
RMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARI
AQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPE
QIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDK
CMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATS
GADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRN
HLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRT
CAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEY
LLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQ
AEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVL
IQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGF
VYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKG
TLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDM
LSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggc
cctgaggcagacaggcatctactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttattgctactctgtgttacgccgttgacaatcccctgcac
taccagaagagcttgaagccatcggcccacttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtgatatttggacttgctttgctcaactccagtaacgcagac
cttcgtggttttgctgcgcagttcatcaagcagaaacttccggacctcctgcggtcatac
gttgacgcagatctcggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ttgcagttactgctctcgcatctactgtttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagctaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtgctagtcttgatgaatgcagaaacataatccttcagtat
ggggtgagggaggtcactgccagccaggtagccagggtactgggcatgatggctcgcacc
cactctggcttaactgatggcatcccactacagtccatctctgctccaggaagtggtatc
tggagtgatagtaaggataagaatgatggctcccaagcacacacgtggaatgttgaagtt
ctcatcgatgttgtgaaagaagtgaatcccaacctgaacttcaaggaggtgacatacgaa
ttggaccacccaggctttctaatccgggacagtaaaggcctgcatatagtggtgtatggc
attcagagggggttgggcatggaagtctttcctgttgatctcatctataggccatggaaa
cacgctgagggacagctatcattcattcagcactccctaatgagcccagaagtgttttcc
tttgctgattacccttgtcacactgtggccatagacatccttaaggccccaccagaggat
gacaacagggagattgccacctggaaaagtctggacctggtggagagcctgcttaggcta
tctgaggtgggccagtatgagcaggtgaagcagctgttcagctttcctatcaagcactgt
ccagacatgttggtgctggcactgctgcagatctccacctcctggcacacactgcgccat
gagctcatctctacactgatgcctatcttcctcggcaaccaccctaactcagccattatc
ctgcattacgcctggcatggacagggacagtctccctccatccgtcagctaattatgcat
tcaatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgttgctgaatggtactccatttgcc
tttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccttttatccaggcgtgtgtgacattcctg
aagaggcgctgcccatccattatggggggtctggccccagacaaggaccagcccaaaagc
gcccagctgcccccggagaccttagccaccatgctagcctgcctgcaatcctgtgctggg
ttaggtaccggcagcgttttaaaaacgatcctaaccatggttgctaactgcagcaatgta
atgaataaagcccgacaaccaccaccaggggtgatgccaaagggacgtgctcccagcacc
agcaccttgngtgccatctctcctgtacagatggacactctgtctggcatcggttccttg
aacctggggggcacagccacctctcacactcaaagcatgcaaggtttcccaacctcgctg
agttcggctttcagtaatccccagtccccagcaaaggccttcccaccactctccaacacc
aaccccagcacaccatttgggggcattggcagcctgtcttcgcagctccctggtcctttg
ggcacaggcatcggctctggtattggttctagtctggggatgccaccggtaaacacagac
ccttttggcaccaggaagatgagcacaccaggcctgaacccacctacttttcagcagact
gacctttctcaggtctggcccgaggcaaaccagcactttagtaaggagatagacgacgaa
gcaaacagttattttcagcgcatctacaaccatccacctcatccaactatgtctgtggat
gaggtactggaaatgctgcagagattcaaggattcaaccatcaagcgggagcgagaggtg
ttcaattgcatgcttcgcaacttgtttgaggaatacagattcttcccccaatacccagac
aaggagctgcacatcactgcctgcctttttggtggcattattgagaagggtcttgtcacc
tacatggccctgggcttggccctccgatatgttcttgaagccttacgaaaaccctatgga
tccaaaatgtattactttggaattgctgccctagataggtttaaaaacagactaaaggac
tatcctcaatattgtcaacacttggcttcaattgctcacttcttgcaattcccccaccat
ttacaagagtatatcgagtatggccaacagtcacgggaccctccggtgaagatgcaaggc
tccatcaccacccctggcagtctggcactggcacaagtccaagcacagacccagtcacag
caacctggtgtccccaaagccccacagccaggtcagcccagcactctagtcaccaccgcc
acgactacaaccacagtagccaagacccctaccatcaccagaccaacacccggcatcttc
aagaaggatgtccctccctccataaacacaaccaacattgacacactgctagtggccact
gaccaaacagaaaggatcgtagagcctccagagactgtccaggagaagattgcgtttatc
tttaacaacctttctcagtccaacatgacacagaaggttgaagagttgaaagaaacggtg
aaggaagagtttatgccgtgggtgtctcagtacctggtgatgaagcgtgtcagcattgag
cccaacttccacggtctttactccaactttctggacactcttaagaaccctgagtttgtg
aagatggtcctcaatgagacatacaggaatatcaaggttctgttgacatctgacaaggca
gctgccaatttctctgatcgctctctactgaagaacttgggccactggttgggcatgatt
acactggccaaaaacaagcctattctttacacagatctggaagtcaagtctctgctgctg
gaagcctatgtgaaaggccagcaggagctactgtacgtggttccctttgtggccaaagtt
ttggagtccagtctacgaagcatggtcttccggccccagaacccctggaccatggccatc
atgaatgttctcgctgagctgcatcaagagcatgacctcaagctgaacttaaagtttgag
attgaagttctgtgtaagaacttgtctttggacatcaacgatctaaagccaggaaacttg
ctgaaggacaaagataagctgaagagcctggaggagcagctgtctgcaccaaagaaagag
gcaaagcctccagaggagatgctgccagtgtctaccacagactttgttccattcgcagcc
cctccctcaaccccagctgccaccaccaccacttgcacaaccacagggccccccacccca
cagttcagttaccacgacatcaatgtgtatgccttggcaggtctggctccacacattaat
ataacagtcaacatccctctgctacaggcccatccacagttgaagcagtgtgtacggcag
tcagtagagcgagctgttcaggagctggtacaccctgtggttgaccgctctatcaaaata
gccatgacaacctgtgagcagatcatcaggaaggactttgccctggattcagaggagtcc
cgcatgcgtgtggctgcccaccacatgatgagaaacctgactgctggcatggccatgatc
acctgccgggagcccctgctcatgagcatcgccaccaaccttaagaacagctttgctgct
gcactaagggccccaacaccccaacagagggagatgatggaagaggctgcagccaggatt
gctcaagacaactgtgaattggcttgctgcttcattcagaaaacagccgtagagaaggct
ggccctgaaatggacaagagactagccacggagtttgagctgaggaagcatgcacggcaa
gaggggcgtcgttattgtgaccctgttgttctgacgtaccaggctgaacgtatgcctgaa
cagatcagactcaaggtgggaggagtggacccgaagcaactggctgtatatgaggagttt
gccaggaacgttccaggtttcttacccagcaatgatctctctcaacctactggcttcttg
gctcagcccatgaagcaacaggcatgggccacagatgatgtggctcagatctatgataag
tgcatggcagacttggagcaacatcttcatgccatccctccagccctggccatgaacccg
ctgacccaggctctgcgcagcctgctggaagctgtggccttggctaggaactccagggac
ggcatcgccgcacttggacttttgcagaaggctgtggaaggtcttctggatgctactagt
ggtgctgatgcagacttgctgctccgctacagggagtgccacctgctggtgcttaaagcc
ctacaagatggacgggcctatggaccacagtggtgcaataagcagatcaccaggtgtctg
attgaatgccgtgacgagtacaaatataatgtagaggcagtggagcttttgattaggaac
catctcgtgaatatgcagcagtatgacctgcacctggcacagtcaatggaaaacggactg
cactacatggccgttgcatttgccatgcaattggtgaagctcctgcttgtggatgaacgc
agtgtcagccatgtcacagaggctgacctcttccacacaattgaaactttaatgaggacc
tgtgcacactccagagccaacgcacctgagggccttccccagctgatggatgttgttcgc
tccaactatgaggccatgattgaccgggcccatggaggacccaacttcatgatgcactct
gggatttcacaagcttcagaatatgatgatcctccaggcctgagggagaaagccgagtac
ctcctgagggaatgggtcaacctttaccactcagctgctgctggcagggatagcaccaaa
gctttttctgcattcgtcggccagatgcaccagcagggcatcctgaagaccgatgacctg
atcaccaggttcttccggctgtgcacggaaatgtgtgtggagataagctatcgggcacag
gctgagcagcagcacaacccagcagccagtgcagccatcatcagagccaagtgttaccat
aacctggatgcctttgttaggctcatagccctgcttgtcaaacactctggagaggccacc
aacacagtgacaaaaatcaacctcctcaataaggttctgggtatcgtagttggggtgctg
attcaggaccatgatgtccgtcagacagaattccaacagctgccgtaccaccgcattttc
atcatgctgctgttggagctcaacgctcccgaacatgttttggagaccatcaacttccag
accctcaccgccttctgcaacaccttccacatcctgagacccaccaaagcacccggcttt
gtgtacgcctggctggaactgatctcccatcgtatcttcatcgccaggatgctagcacac
acaccgcagcagaagggttggcccatgtatgcacagctgctgattgatctcttcaagtac
ctggccccattcctgaggaatgtagagctcaacaaacctatgcaaatcctctacaagggc
acactgcgagtgctcctggtcctgctgcatgacttcccagagttcctgtgtgactaccat
tacggcttctgtgatgttatcccacccaactgcatccagcttcgcaacctcatcctcagt
gcctttccacgcaacatgaggctccctgaccctttcacacccaatctcaaggtggacatg
ctgagtgagatcaacattgctccccgtatcctcaccaacttcacaggcgttatgccttcc
cagttcaagaaggacctggactcgtatctgaagactcgctcaccagtcacctttttgtct
gagctgcgcagcaacttgcaggtgtctaacgagccaggaaaccgctacaacatccagctg
atcaatgctctggtgttgtatgtaggcacacaggcgatcgctcacatccacaacaaaggc
agcaccccctccatgagcacgatcacccactctgcacacatggacatcttccagaacctg
gccgtggacctggacacggaggggcgttacctgttcttgaacgcaatcgccaatcagctg
cgctaccccaacagccacactcactacttcagctgcaccatgctctatctgtttgctgag
gccaacaccgaggccatccaggagcagatcaccagggttctgttggagaggctgatagtg
aacaggcctcacccatggggtctcctcatcaccttcatcgagctgatcaagaaccctgcc
ttcaagttctggagccacgactttgtgcactgtgctcctgagattgaaaagctgttccag
tcagtagcccagtgctgcatgggacagaagcaggcccagcaggtgatggagggcactggt
gccagctag
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integrated database retrieval system
