Etheostoma spectabile (orangethroat darter): 116696884
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Entry
116696884 CDS
T08457
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04010
MAPK signaling pathway
esp04020
Calcium signaling pathway
esp04510
Focal adhesion
esp04518
Integrin signaling
esp04540
Gap junction
esp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116696884 (pdgfrb)
04020 Calcium signaling pathway
116696884 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
116696884 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116696884 (pdgfrb)
04540 Gap junction
116696884 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
116696884 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
esp01001
]
116696884 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
esp04090
]
116696884 (pdgfrb)
Enzymes [BR:
esp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
116696884 (pdgfrb)
Protein kinases [BR:
esp01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
116696884 (pdgfrb)
CD molecules [BR:
esp04090
]
Proteins
116696884 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
Adeno_E3_CR1
RIFIN
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
Zwei_Ig_N
PPC
Haspin_kinase
Ig_VEGFR-1-like_5th
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
116696884
NCBI-ProteinID:
XP_032384007
LinkDB
All DBs
Position
10:18321565..18362906
Genome browser
AA seq
1102 aa
AA seq
DB search
MMRVTASTLHLTVIVTALLYFCTELCCLEITPDVKELVLAEGSSLILTCSGSEDTSWEFK
RDDVPYFQVEVQHGGPSYQIVQSSITSSVLTLRNVSWKHTGVYQCVDQHTGETKEVAVFV
PDPDVWFVVSSHGMVTKTSEESTVPCVVTNPNINVTLYESDTDLPITGLYVPSEGYKARL
EDRAYVCRGELNNEVKESQAFNVFSIVVPEVIDAYINASKTVLKQGEPLTVNCTVHGVML
VFFSWAIPNRKVVEVEPLTDILSTMNMRSCLIFPQTTVAHSGNYVCHVHEPVQDQAATAS
INITVLEQGFVDVKAAQQQNISAKLQENVELRVEIEAYPPPQVRWSKDGAAIKGDKTITT
RQEHEISYVTTLTLVRVRTEQKGLYTVLVTNGDDTKEVTFDLEVQVPSQIKDLTDHHLPG
KRHLVTCVAEGVPTPSIQWYSCDSMHKCSNQTAAWQPLIPEPEVLSIRTNVSYSETRKTS
QVLSQVTFHKPQQVTLRCETSNQAGLLDRRDVKLVSSTLYSQVAVLAAVLALVVIIIISI
IILIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMQRDNLVLGRTLGSG
AFGRVVEATAYGLTHSQSSIKVAVKMLKSTAKRSETQALMSELKIMSHLGPHLNIVNLLG
ACTKNGPLYLVTEYCRYGDLVDYLHRNKHNLLQYYAEKNQDDGYLISGGSTPLSQRKGYV
SFGSESDGGYMDMSKDEPTIYVPMQEQMDSIKYADIQPSPYESPYQQDIYQEQGGGGLDL
AISDSSVLTYDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARD
IMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMN
ELFYSALKRGYRMAKPAHASDEVYDIMKKCWDERFEKRPDFSFLVHSVGNMLTDSYKKQY
SQVNDNFLKSDHPAVARTKPRLSSPFPITNPAFGSPSPFYMPPDPYSQSSSPAEFRQEAD
TQEVITSYNEYIIPIPDPKPEDVFSLMPSESPASSLALEEETDSMSQDTADTLPEEDRLE
ETSERDALLGSAGMPEVEDSFL
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgatgagggtgacggcatccacgctccatctgacggtcatagttacagctcttctgtat
ttctgcactgagctctgctgtctggagatcacacccgatgtgaaagagctggtcctggca
gagggctcctcgctcatcctcacctgctccggctcagaagacacgtcgtgggagttcaag
agggacgatgtgccctacttccaagtggaagttcaacatggtggtccaagctaccaaatt
gtgcaaagcagcatcacatccagtgttttgaccttgaggaacgtgagctggaagcacaca
ggggtgtatcagtgcgttgatcaacacactggagaaactaaggaggtggctgtttttgtc
ccagaccctgatgtgtggttcgtggtgagctcccacggcatggtaacaaagaccagcgag
gagagcaccgtcccctgtgtggtcaccaaccccaacatcaatgtcaccctgtatgagagc
gacactgatctgcccatcacgggactttatgttccaagtgaggggtacaaggcacggctg
gaggacagggcctatgtgtgccgcggagaactgaacaatgaggtgaaagagtctcaggcc
ttcaacgtcttcagcattgtcgtcccagaggtcattgacgcctacatcaatgcgtcaaag
accgtcctgaagcagggcgaaccgctgacagtaaactgcacagtgcacggagttatgctt
gtgtttttttcgtgggctatccccaatagaaaggttgtagaggttgagccgctaacagac
atcctgtccaccatgaacatgcgctcctgcctgatctttcctcaaaccacggtggcccac
agcggaaactacgtctgccatgtccatgagcctgtccaagaccaggctgccacggccagc
atcaacatcactgtgctcgagcaaggctttgtggatgtgaaggctgctcagcaacaaaac
atttcagccaagctgcaagagaacgtggagctgagagtggagattgaagcctaccccccc
cctcaggtccgctggagcaaagatggcgccgccatcaaaggagacaaaaccatcacaacc
agacaagagcatgagatcagttatgtcactactctcaccttggtgagggtgaggacggag
cagaagggtctctacactgtccttgtcactaacggagatgatacaaaggaagtaaccttt
gacttggaagtccaagttccttctcagattaaagacttgactgaccaccacctccctggg
aagagacacttggtgacctgtgtagctgagggggtcccaaccccatccatccagtggtac
agctgtgacagcatgcacaagtgtagcaaccagacagcggcgtggcagccgctgatacca
gagccagaggtgctgagcatccgcaccaatgtcagctacagcgagactcgtaaaaccagc
caggtgctgagccaggtgaccttccacaagccccagcaggtcacattgcgctgtgagacc
agcaaccaagcaggactccttgacagaagagacgtcaaactggtgtccagcaccctgtac
tcccaggtggcagtattggctgctgttttagccttagtggtcatcattatcatatctatc
atcatcctcattgctgtatggaggaagaaacctcgatatgagatcagatggaaggtgata
gagtctgtgagccaggacggtcacgagtacatctatgtagacccgatccacctgccctat
gacctggcctgggaaatgcagcgagacaacctggtgctgggtcgcactcttggatcagga
gcctttggcagggtggtcgaggcaactgcctatggtctcactcattcccagtccagcata
aaagtggctgtgaaaatgctgaaatctacagccaagagaagtgagactcaggctctgatg
tccgagttgaagatcatgagtcacctgggtcctcacctcaacattgttaacttgcttgga
gcttgcaccaaaaatggccctttgtacctggtgacagagtactgtcgctatggcgacctg
gtggactacctgcacaggaacaagcacaacctcctgcagtactacgctgagaagaaccaa
gacgatggctacctcatctcaggaggaagcactccgctcagccagaggaaaggttatgtg
tcctttggaagtgagagtgatggaggatacatggacatgagtaaagacgagcccaccatc
tacgtgcctatgcaggagcagatggacagcatcaagtatgcagacatccaaccctctcca
tacgagtctccctaccagcaggacatctatcaggaacaaggtggcggcgggttggacctg
gccatcagtgactcttctgttctcacctatgatgatctgttgggcttcagctaccaagtg
gcaaaggggatggagttcctcgcctcaaagaattgcgtccaccgggacctcgctgcaagg
aatgtgttgatctgtgaggggaagctggtgaagatctgtgactttggcctggccagagac
atcatgcatgattccaactacatctctaaaggcagcactttcctgcccctgaagtggatg
gcaccagaaagtattttccataatttgtacaccaccctgagcgacgtgtggtcatacggc
attcttctttgggagatttttactttgggaggaaccccctaccctgatttgcccatgaat
gagttgttctacagcgctttgaagagaggctaccgaatggccaaacccgcccacgcctct
gatgaagtttatgacatcatgaagaagtgttgggatgagaggtttgagaaaaggcctgat
ttctcgtttctggtccacagtgtggggaatatgttgacagacagctataaaaagcaatac
agccaagtcaacgacaacttcctgaagagtgaccacccggcagttgcccgcaccaaaccc
agactctcctcaccctttccgatcactaacccagcatttggctccccatcccccttctac
atgcccccggacccctacagccagagctcgagccccgcggagttcagacaagaggcagac
acacaggaagtcataacttcatacaatgaatacatcattcccatcccagaccccaagccg
gaggacgttttctctcttatgccatcagaaagccctgcaagctctctggctctggaggag
gagaccgactccatgtcgcaggacactgctgacaccctcccagaagaggacaggctagag
gagaccagcgagagagatgctctgctgggctccgccgggatgcccgaggtagaagacagc
ttcttgtag
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