Etheostoma spectabile (orangethroat darter): 116704244
Help
Entry
116704244 CDS
T08457
Symbol
whrn
Name
(RefSeq) whirlin isoform X1
KO
K21879
whirlin
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
esp03037
]
116704244 (whrn)
Cilium and associated proteins [BR:
esp03037
]
Primary cilia and associated proteins
USH complex and associated proteins
116704244 (whrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
USH1C_N
HHD_RTEL1
PAH_ZNF598
DUF6288
Motif
Other DBs
NCBI-GeneID:
116704244
NCBI-ProteinID:
XP_032395445
LinkDB
All DBs
Position
16:1079887..1380328
Genome browser
AA seq
991 aa
AA seq
DB search
MSSTDLERMSLSSSANSVASSARTLSANVRKLHNALNLLLNDFEREQFIHCLNVYHSKRN
VYDLVQTLNVILNAPSKRQLLPMLRLVIPRSDQLLFEQYTSEGLYLKSDSVASNGNAEPP
PGDFPSASPTPQGHFSPNNTPDFQVALRGSPDSFSTSSEGTAPLVPLLGRNFVHEPLGEI
RQVTMKRHKSNEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRIGDQIMKVNDKVFDK
VTHAEAVKVLKGSKKLCLSVRSVGRIPGGYVTNHVYTWVDPQGRSVSPPPDLTEHRSATL
RRTDSQRRSNMQLLQEGDEKKVNLVLDDGRSLGLMIRGGAEYALGIYITGVDQGSAAECG
GLKLFPGPPLPPCSVPPAMPLCSPPPPQVGDQILEVNSRSFLSIPHDEAVRVLKSSRHLM
MTVKDVGRLPHARTVVGETKWIASSQIGESSANSSMAGFPVEKGASAAGKPGFYKGVAGS
QVTLSSLVNQSRAMLEEQARHLLTEAERQTMVYYVEEYRDGHIGVEQLVVALFELLNTHA
KFSLLSEVRGLVTPQDLEHFDGLVLRREIQALKARQGTAGATALQPDSLSMVSYPDTLTS
SSASFMTNTTLSSARNDSVVESNKEDPPESLNTLLTDISLDDVQSTTAESPPSFKPPPPP
GVHRRPTRRDQLNKCPSSESSHSGLYFTAPASHNHSKEPGHVPASPSLHHKRERPREPSR
DYAVVRKRDPSVPSKNEQIAAAHLSMVTQHTIGPFPRVQSPSRGTKPAAPSLSPPPPPPL
PAPNPPPSLPLKLVSMSKASPSSPGSEQRFVTVEVHRPNAEPDFNEVRPLPQARGGALSQ
LSDSGQTLSEDSGVDIAESGHISKDRSPHSSRTRHPRDTQGGGGDNPSKPPGLLEPTSTL
VRVAKSASTLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGQVILEVNGVSMRGRE
HRDAARLIAEAFKTKERDHVDFLVTDFNVAL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaccgacctggagcgcatgtcgctcagctcctcggccaactcggtggcttcc
agcgcacggacattgtcggccaacgtgaggaagctgcacaacgcgctcaaccttctgctc
aacgactttgagagggagcagttcatccactgcctcaacgtctatcactccaaacgcaac
gtgtacgacctggttcagacccttaacgtcatccttaacgcgcccagcaagcggcaactt
ctgcccatgctgcggttagtcattccccgctctgaccagcttctctttgagcagtacacc
tcggagggcctatacttaaaatcggattcagttgcaagcaatggcaacgcggaacccccg
ccgggcgacttcccaagcgccagccccactccccaggggcatttctcgccaaacaacacg
cccgatttccaggtggcgttgcgtggctcgccggacagcttcagcaccagcagcgagggg
acagcacccctggtgccgctgctcgggaggaactttgtccacgagccgctgggcgagata
cgacaggttaccatgaagcgacacaagagcaacgagggtctgggcttcagcatccgcggc
ggctcggagcacggcgtcggaatctacgtgtccctggtggagccgggcagcctggcggag
aaagagggtctccgaatcggtgaccagatcatgaaagtcaacgacaaagtcttcgacaaa
gtcactcatgctgaagcagtgaaggtgctgaaaggcagtaaaaagctttgcctctctgtg
cgttcagtcgggcggattccgggcggctacgtcaccaaccatgtttacacctgggttgac
cctcagggtcgaagtgtgtccccccctcccgacctgactgagcaccggagtgccaccctg
aggagaaccgacagccagcgacgcagcaacatgcaactactgcaggagggagacgagaag
aaggtcaatttggttttggatgacggccggtctctgggtctgatgatccgggggggagca
gaatatgctctgggtatttacatcaccggagtagaccaaggctcagcagcggaatgtgga
ggactcaagttgtttcctggtccgcccttaccgccgtgctcagtcccccctgccatgcct
ctgtgttcccctcctcccccgcaggtcggcgaccagatcttggaggtgaacagccgcagc
tttctgagcatcccgcacgacgaagccgtcagggtcctgaagtcgtcacgccacctgatg
atgacggtgaaagacgtgggccgcctgccacatgcaaggacggtggtgggggagaccaag
tggatcgccagctcgcagatcggagaaagctccgccaacagcagcatggcaggcttcccg
gtggaaaaaggagcctcggcagcaggaaagcctgggttttataaaggcgtggcggggtca
caggtgaccctgtccagcctggtgaaccagtcgcgggccatgctggaggagcaggcgcgc
cacttgctgacggaggcagagcggcagaccatggtctactacgtggaggagtaccgggac
ggacacatcggtgtggagcagcttgtggtggcgctgttcgagctgctcaacacgcacgca
aagttctctctgctgtcagaggtgcgaggtctggtcaccccacaggacctggagcacttt
gatgggctggtgctgagacgcgaaattcaggctctaaaagcgcgacaggggacagctgga
gccacggcgctccaaccagactccctgtccatggtgtcgtacccagacaccctgacgtcg
tcttcagccagcttcatgaccaacaccaccctcagctctgcacggaacgacagcgtggtg
gagagcaataaggaggatcctccagagagtctaaacacgctgctgaccgacatctctctg
gacgatgtacagtccaccacagctgaatctcccccctccttcaagcctccgcccccaccg
ggggtgcacaggcgcccaactagacgagatcagctcaacaaatgcccctcgtccgaatcc
tcccactcaggcttgtacttcacagccccggcctcccacaaccacagcaaagagccagga
cacgtccccgcctcgccctcgctacaccacaaacgagaacgtcccagggaaccgtctcgg
gactacgcggttgtcagaaagagagatccctcggtaccttctaagaacgaacaaatagca
gctgctcacttgtccatggtcacacagcacaccatcggccctttccccagggtccagtcc
ccaagcagaggcaccaaacctgctgccccgtccctttcacctccacctccacctccactc
cctgctcctaatccgcccccttctcttcctcttaaactggtgtctatgtccaaagcctcc
ccctcctctcctggctctgaacagcggtttgttacggtggaggttcataggcccaacgca
gagcccgacttcaacgaggtgcgcccgctgccccaagctcgaggtggcgctctgtctcag
ctgtcagatagcggccaaaccctcagtgaggacagcggggtggacatagctgagtcagga
cacatcagcaaagacagaagcccacattcctcacgcacacggcacccccgagacactcaa
gggggcgggggggacaacccctccaaaccgccggggctgttggagcccacctctacacta
gtgagggttgcaaagagtgccagcactctgggtattgccattgaaggtggagccaacact
cgccagccgctgccacgaattgtcacaatacagaggggtggttcagcccataactgcgga
cagctgaaggtgggacaggtgattctggaggtaaacggggtttccatgaggggccgcgag
cacagggatgcagcacgcctcatcgctgaggccttcaagaccaaagagagggaccacgtg
gacttccttgtcaccgatttcaatgtggccctatag
DBGET
integrated database retrieval system
