Echinops telfairi (small Madagascar hedgehog): 101644355
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Entry
101644355 CDS
T08707
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X4
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101644355 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etf03019
]
101644355 (CNOT1)
Messenger RNA biogenesis [BR:
etf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101644355 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101644355 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
101644355
NCBI-ProteinID:
XP_004704686
UniProt:
A0ABM0IPB9
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSLDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYSEKRDILMDRIL
PDSGGVAKTMMESSLADLMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLQNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLGGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGNSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQEMLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLAIDINDLKPGNLLKDKDRLKNLDEQLSAPK
KDVKQTEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAVPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaagagtgcgcctcc
ctgattacgaagccaaattttatctcgacgctttcctatgccattgataatccattgcac
taccagaagagtttgaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtgcaagaggtaatttttggccttgccctcttgaattcttccagcttggat
ctcagaggtttcgctgcccagtttatcaaacagaagcttccagatcttctgcgttcgtac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gagcagatagacgcttttcttaagacacttcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccactgttatactctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagctctctggctgatctaatgcaa
gaagtaggctatggcttttgtgcaagtgttgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaagtcacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cactcagggttaacagatggtattccattacagagtatctctgctcctggcagtgggatc
tggagtgatgggaaagacaaaagcgatggagctcaggcacacacgtggaatgtggaagtc
ttgatcgatgttctcaaagagctgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccaccctggatttcagattcgtgatagtaaaggacttcaaaatgtggtttatggt
attcagagaggcctgggtatggaggtgttcccagtagacctgatatacaggccttggaaa
catgcagaaggtcagctttccttcattcagcattcccttatcaatccggagatcttctgt
tttgctgactatccctgccatactgttgccactgacattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgagtctctgctgaggctc
gcagaagtggggcagtatgagcaagtcaaacagcttttcagcttcccgatcaaacactgt
ccagacatgttggtattggccttactacagataaacacctcctggcacaccttgcgccat
gaactcatctccactctgatgccaattttccttggaaaccacccaaactctgctattatt
ttacactatgcatggcatggacagggacagtctccctcaattcgccaactgatcatgcat
gcgatggcagagtggtatatgcgaggggagcagtatgaccaggccaaattgtctagaatt
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgagaatacctcaaacttgacaagtgg
ctcacagataaaattagagagcatggggagccctttatccaggcctgtatgaccttttta
aaaagacggtgcccttccattttgggtggacttgcccccgagaaggatcagcccaaaagt
gctcaactccctccagaaactctggcaacaatgttggcctgtctacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatccttaccatggtagccaattgcagtaacgtt
atgaacaaggccaggcagcctccacctggagttatgccaaaaggacgccctcccagtgct
agcagcttagatgctatttctcctgttcagattgacccgcttggtggaatggcatctctt
agtataggtggttcagctgccccccatacccagagcatgcagggctttcctccaaatttg
ggctctgccttcagtacccctcagtcaccagcaaaagcatttccacccctttctacacca
aaccagacaactgcattcagtggtattggaggactttcgtcacagcttccagtaggtggt
cttggcacaggcagtctgacgggtataggaactggggctcttggactccctgcagtgaat
aatgacccatttgtacagagaaaactgggaaactctggactgaaccagccaacattccag
cagagtaagatgaaaccttcggacttgtctcaagtgtggccagaggcaaatcagcacttt
agtaaagagattgatgatgaagcaaacagttatttccagcgaatatataatcaccctcca
catcctaccatgtctgttgatgaagtattagaaatgctacagaggtttaaagactctacc
attaagcgagaaagagaagtttttaattgtatgctgaggaacttgtttgaagaatatcga
ttttttccccagtaccctgataaagaattacatataacagcttgtctgtttggtgggata
attgaaaaaggactggtcacttacatggccctaggactggccctgcgatatgttcttgaa
gccttacgtaaaccttttggatccaaaatgtattactttggaattgctgctttagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctatcagtcac
tttatgcaattcccacatcatttacaagagtatatcgagtatggacagcagtctagagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctcctcttgctggtcaggttagcactatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaggccaaccggagtc
agctttaagaaagatgtgccaccttctattaatactaccaatatagatacgttgcttgtg
gccacagatcaaactgagagaattgtagaaccaccagaaaatatccaagagaaaattgct
tttatcttcaacaatctctcacaatcgaatatgacacaaaaggttgaagagctaaaggaa
actgtgaaagaagaatttatgccttgggtttcacaataccttgttatgaagagagtcagt
attgagccaaactttcatagcttgtattcaaacttcctcgacactctaaagaaccctgaa
tttaacaagatggttctgaatgagacctacagaaacatcaaagtactcctgacatctgat
aaagctgcggccaatttctcagatcgttctctgctgaagaacttgggacattggctagga
atgatcacactagctaaaaataagcccatcctacacactgatttggatgtaaaatctttg
ctgctggaagcgtatgttaaaggacagcaagaaatgctctatgtagtgccctttgttgcc
aaagttttagagtcgagcattcgcagtgtggtttttagaccaccgaacccctggacgatg
gcaattatgaatgtattagctgagctacatcaggaacacgacttaaagttaaacttgaag
tttgagattgaggtcctctgcaagaaccttgctatagacatcaatgatctgaaacctgga
aatctcctgaaggataaagatcgtctaaagaacttagatgagcagctgtctgctccaaag
aaagatgtcaagcagacagaagaacttcctcctatcacaaccacaacaacatctacaaca
ccagctaccagcaccacctgtacagcaactgttccacctcagccacagtatagctaccac
gacatcaatgtctactccctcgcaggcctggcaccacacattaccctaaacccaacgatt
cccttgttccaggcccatccacagttaaagcagtgtgtgcgtcaagcaattgagcgagct
gtccaggagctggtccatcctgtggtggacaggtcgattaagattgccatgacaacttgc
gagcaaatagttaggaaggattttgccctagactctgaagaatcccgaatgcggatagca
gctcatcatatgatgcgtaacctaacagcaggaatggccatgattacttgcagggagcct
ttgctcatgagcatctctaccaacctgaaaaacagttttgcctcagcccttcggactgca
tccccacagcaaagggaaatgatggatcaagcagctgctcagttagctcaggacaattgt
gaacttgcttgctgttttattcagaagactgcagtagaaaaggcaggccctgagatggac
aagagattagcaactgaatttgagttaagaaaacatgccaggcaagaaggacgccgatac
tgtgatcctgttgtgttaacgtaccaagcggagcggatgcctgagcaaatcaggctgaaa
gttggtggtgtggaccctaaacagctggctgtttatgaagaatttgcacgcaatgtgcct
ggctttttgcctacaaacgacttaagtcagccgactgggtttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgcattacagagttggaa
cagcacctgcatgccgtcccaccaactttggccatgaaccctcaagctcaagctcttcga
agtcttttggaggttgtagtattatctcgaaattctcgggatgccatagctgctcttgga
ttgcttcagaaggctgtagaaggcttgctagatgcaacaagtggtgctgatgctgacctg
ctgctgcgttacagggagtgccacctcttggtcttaaaagctctgcaggatggccgggca
tatgggtctccatggtgtaacaaacagattacaaggtgcctaattgaatgtcgagatgaa
tataaatacaatgtggaagctgtggagttgcttattcgtaatcatctggttaatatgcag
caatatgatcttcacctagctcagtcaatggagaatggcttaaactacatggctgtggcg
tttgctatgcaattggtgaaaatcctgttggtggatgaaaggagtgttgctcatgttact
gaggctgatctcttccacaccattgaaaccctaatgaggattaatgcccactccagaggc
aatgctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggtccaaactttatgatgcattctgggatatctcaagcctcc
gagtacgatgatcctccaggcttgagggaaaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagccggccgtgatagtaccaaagcgttctctgcgtttgtt
ggacagatgcaccagcaaggaatcctgaagactgatgacctcataacacggttctttcgt
ctgtgcacagaaatgtgtgtggaaatcagttaccgcgctcaggctgagcagcagcacaat
cctgctgccaatcccaccatgatccgagccaagtgctatcacaacctggatgcctttgtc
cgactcattgcactgctagtgaagcactcaggggaggccaccaatacggtcacaaagatc
aatctgctcaacaaggtccttggtatagtagtgggcgttcttctgcaagatcatgatgtt
cggcaaagtgaatttcaacagcttccctaccatcgaatttttatcatgctgctcttggag
ctcaatgcacctgagcatgttttggaaaccattaatttccagacactaacagctttctgc
aatacattccacatcttgaggcctaccaaagctcctggctttgtgtatgcctggcttgaa
ctgatctcccaccggatatttattgcaagaatgctagcacatacaccacagcagaaggga
tggcctatgtatgcacagctactgattgatttattcaaatacttagcacctttccttaga
aatgtggagctcaccaaacctatgcaaatcctctataagggcactttaagagtgttgctg
gttcttttgcatgatttcccagagttcctttgtgattatcattatgggttctgtgatgtg
atcccacctaattgcatccagctacgaaatctgatcctgagtgccttcccaagaaacatg
aggcttccggacccattcactccaaatctgaaggtggacatgttgagtgaaattaacatt
gcaccccgcattctcaccaacttcactggagtgatgccacctcaattcaaaaaggatttg
gattcctatcttaaaactcgatctccagtcacttttctgtcagatttgcgcagcaaccta
caggtatccaatgagcctggcaatcgctataacctccagctcatcaatgcactggtgctc
tacgtagggactcaggctattgcacacatccacaacaagggcagcacaccttctatgagc
accatcacccactcggcacacatggatatcttccagaacctggctgtggacttggacact
gaagggcggtacctctttttgaacgcaattgcgaatcagctgcggtacccaaatagccac
acgcattacttcagctgcaccatgctgtacctttttgcagaggccaacactgaagctatc
caggaacagatcacaagggttctcttggaacggttgattgtaaataggccacatccttgg
ggtctgcttattaccttcattgagctgattaaaaatccagcgtttaagttctggaaccat
gaatttgtacactgtgccccagaaattgaaaagttatttcaatcggtcgcacagtgctgt
atgggacagaaacaagctcagcaagtaatggaagggacgggggccagttag
DBGET
integrated database retrieval system
