Empidonax traillii (willow flycatcher): 114058523
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Entry
114058523 CDS
T05887
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114058523 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
etl03021
]
114058523 (POLR1A)
Enzymes [BR:
etl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114058523 (POLR1A)
Transcription machinery [BR:
etl03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
114058523 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Motif
Other DBs
NCBI-GeneID:
114058523
NCBI-ProteinID:
XP_027741775
LinkDB
All DBs
Position
Unknown
AA seq
1708 aa
AA seq
DB search
MRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKPITNPQYLDNVGNPAANGLYDLALGPPDS
KEVCATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLL
LSQLKVLEKGLLHAVYDLEVILNRFLEQCADATGSEIEEELNRHVQEMLQSSQTRDQCSN
VKNVCDCRHNLIAQFWKAHMSSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYNKAGGGGI
LDDPAAIDESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPDESSEFSPDMFFL
DLLVVPPSRYRPVNRLGDRLFTNGQTVNLQAVMKDAQTIRKLLVFMAKEQCQPIKFAEEI
QAEMGGDNEPLDRSVLTAIPGQSIADKLYNSWIRLQSHVNIVFDSDMDKLITDKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAPQSGLKIVCR
HIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAFTDQQYLVPKDGKPLPGLIQDHMVSGVSMTIRGCFFTREQYMELVYRG
LTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINVIPDNHIPLNLTGKAKIGGRAWVKGP
ASTSVNLDSMCESQVIIRNGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGRVLTCLG
RLFTAYLQLYRGFTMGIEDILVKPEADHKRKKIIEKSRQSGIEAVRAALNLPETASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNSYNNEVNKVCMPLGLHRSFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPEQFPFIAENYEVIQKANHLDEALARMEAHQANQQFRAIKKWRARHQSS
VQREGGFLLFSQKKMASVKAQSPGGEIKNGRDPATLQLLKMWYELDEKKRRKYLKKTNKC
PDPSLGVWRPDTHFASVSETFESGVEGYINKWESENRQSYMHPALSSDRLKDLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTP
MMSVPVFNTKKALKKVKHLKKQLTRVCLAEVLQKVDIEESLHVKQKQNKHRLYKIKFHFL
PHEYYREEKCVRPRQILHFMETRFFKIFLEAIKKKNAKMASFSEVSTRKTTRKDLDDDHD
KTLNNQEAAAEEEENIVDAEADEGDGDATESKRRKNQEEEVDYESEEENGEENVDETPED
EEAESEKEEKTPGAEEDQSRAEGEESQPLSFVSQTKKGKDRLLQAAEVRVNAVLDSHPSI
QDYTFDTENELWCEVSLALPLTKVYFDVSSLLTSLARSTVIHEVKGITRCLLNESTTKEG
EKEFVLHTEGINMAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVIIKEIKDVFAVY
GIVVDPRHLSLVADYMCFEGIYKPLNRFGIQSNSSPLQQMTFETSYKFLKEATMMGAHDE
LRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcccaaggtggtgccgtggcggcggctggtgggggtgtccttcgggatgtac
acggccgaggagatcaggaaactgagcgtgaagcccataacgaaccctcagtacctggat
aacgtggggaatccggctgccaacgggctgtacgacctggctctgggacccccggactcc
aaggaagtgtgtgcaacctgcatgcagaacttcagcaactgccccggtcattttggccac
atagagctgcctctgactgtctacaaccccctgttcttcgataaattgtaccttctgatc
cgaggttcttgtttgaactgccacatgctgacgtgtacccgagccgtggttcacctgctg
ctgagccagctgaaggtgctggagaaggggctgcttcacgctgtctatgatctcgaagtc
attctgaacaggtttttagagcaatgcgcagacgcgacgggttcagaaatcgaagaggag
ctgaatcgccacgttcaggaaatgctgcagagctctcaaacaagagatcagtgttcaaat
gtcaaaaacgtatgtgactgtcgacataatctgatagcacagttctggaaagcacacatg
agttcaaagaaatgcccaaactgcaaatccaggagatcactggtgagaaaggagcataac
agcaagctgacagtaacctatccttccacagtgtacaataaggcaggagggggaggcatt
ctggatgatccagcagctattgatgaaagccagttagggaagagaggatacctgacacca
atgactgccaaggagtacatcctggctctgtggaagaatgaaggtttctttttgcgttat
ctcttccctgggatggatcccgatgagagttcagaattcagtccagacatgtttttttta
gatctacttgtggttccaccttcaaggtaccgccccgtaaatcgccttggagatcgacta
ttcacgaacggccagaccgtgaacctgcaggctgtgatgaaagatgcccaaaccatacgg
aaactcttggttttcatggcaaaagagcagtgtcagccaatcaaatttgcagaagaaatt
caagcagagatgggaggggataacgaacctctggaccgttctgtgctgacagcgattcca
ggacagagcattgcagataagctgtacaacagctggatacgtctccagagccatgttaac
attgtgtttgacagtgacatggacaaactgataacagacaaataccctggaattcgtcag
ctgctggagaagaaggaagggctgttccggaagcacatgatgggcaagcgcgtggatttt
gctgctcgatccgtcatttgccccgatatgtacattggtaccaatgagattggcattccc
atggtatttgctaccaaactgacttaccctcagccagtcactccctggaatgtcaaagag
ctgaggcaggctgtcataaatggcccaaaggttcaccccggggcctccatggtcatcaac
gaggacgggtctcgcacggtgctgagcgcgaccagcctgacccagcgggaggccatcgcc
aagcagctcctcactccttcttctggagccccccagtcagggctgaagattgtgtgtcga
catattaaaaacggagatgtcctgttactgaaccgccagcccaccctccacagaccttcc
atccaagctcaccgggcccgaatcctgcctggagaaaaagtgctgaggcttcactacgcc
aactgcaaggcttacaatgctgattttgatggagatgagatgaatgcccattttccacag
agcgagctgggtagggcagaagcctacaccttggcctttactgatcaacagtatctggtg
ccaaaggatgggaagccccttcctggcttgatccaggatcacatggtttctggagtcagc
atgacgatccggggctgctttttcaccagagagcaatacatggagctcgtgtaccgagga
ctgacagacaagaaaggaagaatcaaaacctttcctcctgccattatgaaaccccagcga
ttatggacaggaaagcaggtcgtttctacgttgttaataaacgtcatcccagacaaccac
attccactgaatctgactgggaaagccaagattggtgggagagcctgggtgaagggacct
gcaagcacatctgtaaatcttgactcaatgtgtgaatctcaggttattattaggaacggg
gagttactgtgtggagtcttggacaaagctcactttggcagctctgcttatggcctggtc
cattgttgctacgaaatctatgggggtgaaaccagtgggagagtgctgacttgcctggga
cgcctcttcactgcttacctgcagctgtacaggggctttacgatggggattgaagatatt
ttggttaaacccgaagcagaccacaaaagaaaaaaaatcattgaaaagtcaaggcagagt
ggcattgaagctgttagagctgctcttaatttgccagaaacagcatcctgtgaagaagtc
caagggaaatggcaggatgcccatctctgcaaagaccagagggattttaacatggttgat
atgaaattcaaggaggaagtcaacagttacaacaacgaggttaacaaggtttgtatgccc
cttggtctccacaggagctttccagagaacaatctgcagttgatggtacagtcaggagcc
aaaggatccactgtaaacaccatgcagatttcttgtttgctgggccagatcgagttggaa
ggtcggagacccccactgatggcatctggcaaatcattgccctgtttccagccttatgat
ttttcccccagctcaggaggatttgtgactggcagatttctcactgggatcaaaccttct
gaattcttctttcactgcatggctggcagggaaggtcttgtggatacagctgtcaaaacc
agccgttctgggtacctgcaaaggtgtatcataaaacacttggaaggactggtagtccag
tatgacctgactgtacgagacagcgatggcagcgtggtgcagtttctgtatggagaagat
gggctggatatccctaaaactcagttcttacagccagagcagtttcctttcattgctgaa
aactatgaggtaatccagaaggcaaaccatctggatgaagctttagcaaggatggaggct
caccaagctaaccagcagttcagagccatcaaaaagtggcgagccaggcaccaaagctct
gtgcaaagagaaggaggttttctgttgttttcccaaaagaaaatggcaagtgtgaaagca
cagagtccaggaggtgaaataaaaaatggaagagatcctgctactttacagttattgaag
atgtggtatgagctagatgagaagaaacgaagaaagtatctgaagaagacaaataagtgt
cctgacccaagccttggtgtttggcgtccagacactcattttgcatctgtttcagaaaca
tttgaaagtggagtcgaaggttatatcaataaatgggaatctgagaacaggcaaagttat
atgcacccagcactttcttctgatagattaaaggatttgttgtatttaaagtggcagcga
tctctttgtgacccaggagaagctgtgggtcttcttgcagctcagagtattggggaacct
tccacacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcacg
ttgggtattccaaggttgcgggaaatcctgatggtggccagtgcaaacattaaaacgcca
atgatgagtgttcctgtgttcaataccaagaaagccctcaagaaggtgaaacatcttaag
aaacagctcacaagagtgtgcttagctgaggtcctgcagaaagtggacatagaggaatcc
ctgcacgtgaagcagaagcagaacaagcatcgcctctacaaaatcaaattccatttcttg
ccccacgaatattaccgagaggagaagtgtgtgaggcccaggcagatcttgcacttcatg
gaaacaaggttctttaaaatttttctggaagcaattaaaaagaagaatgcaaagatggca
tcttttagtgaagtcagcactcggaagacaactcggaaggatttggatgatgaccacgac
aagacactgaataatcaggaagctgcagcagaggaagaagagaacattgttgatgcagaa
gctgatgaaggggatggtgatgctacagaaagcaaacggaggaagaaccaggaagaagag
gttgactatgagagcgaagaagagaatggggaagaaaacgttgatgagactccagaagat
gaagaggctgaatcagaaaaagaagaaaagactcctggtgctgaagaagatcagagtaga
gcagagggtgaagaatctcaacctctttccttcgtgtctcagactaaaaaagggaaagat
cgattgcttcaggcggcagaggtgcgagtaaatgccgttctggacagccacccatccata
caggattacacatttgacaccgaaaatgaactttggtgtgaggtttcgctggcgctgccg
ctgacgaaggtgtactttgatgtctcctccctgctcacctccctggcacgcagcacagtg
atccacgaggtgaaggggatcacaaggtgcctgttgaatgaaagcaccaccaaggaagga
gagaaggaattcgttctgcacactgaagggataaacatggcggagctgttcagatactct
gacattttggacctgaacagactttattctaatgatatccatgccatggctaagaattat
ggaattgaatcagccctgagggtgattataaaggaaataaaagatgtattcgctgtatat
gggattgtggtagaccctcggcacctttcacttgtggcagattacatgtgttttgaagga
atttataaaccactgaatcgctttggaattcagtccaactcctcccctctgcagcagatg
acatttgagaccagctacaagttcttgaaggaagcaacaatgatgggtgcccacgatgag
ctgcgctccccttcggcgtgcctggtggttggaaaagttgtcaaaggagggactggcttg
tttgacctcaagcagcccctgacatag
DBGET
integrated database retrieval system
