Empidonax traillii (willow flycatcher): 114063452
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Entry
114063452 CDS
T05887
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114063452 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114063452 (CNOT1)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114063452 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114063452 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
114063452
NCBI-ProteinID:
XP_027751529
LinkDB
All DBs
Position
Unknown
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPNLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLSGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHD
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacgaaacccaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacaaaaactcccggatctcttacgctcttac
attgacgccgacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcacctcctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgcccc
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagcgtcgaggaatgtcgcaacatcatcgtgcagttc
ggggtgcgggaggtgacggcggcgcaggtggcccgggttttggggatgatggctcgcact
cactcggggttgaccgacggtattcccttacagtccatttcggctcctggcagtgggatt
tggagtgatgggaaggataagagtgatggaacccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccccaacctggacttcaaagtagtgacgtacgaa
ctggaccaccctggattccagatccgggacagcaagggcctgcatatcgtggtgtttggc
atccagagagggctgggcatggaggttttcccagtcaatgccatctacagaccgtggaag
cacgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacggacatcctgaaagcaccaccggaggat
gacaatcgagaaattgctacatggaagagcctggatttgatcgagtctctgttacgcctg
gcagaagtggggcagtatgaacaggtgaagcagctcttcagtttccccatcaaacactgc
ccagatatgctggttttggccttactgcagatcaacacgtcctggcacaccctgcgccac
gaactcatctccacgctcatgcccattttcctgggcaaccaccccaactctgccatcatt
ttgcactacgcgtggcacggacagggtcagtctccctccatccgtcagctcatcatgcat
gccatggcagagtggtacatgaggggggagcagtatgaccaggcaaaactctccaggatc
ctcgatgtggcccaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagatcagcccaaaagt
gctcagctccctcccgaaacgctggccacgatgctggcctgtctgcaggcttgtgctggg
agtgtttcccaggagctgtcagagaccatcctcaccatggtggccaactgcagtaacgtc
atgaacaaggctcggcagcccccgccgggagtgatgcccaagggccgcccgcccagcgcc
agcagcctggatgccatctcccctgtgcagatcgactcgctggcagggatggcatctctt
agtttaagtggctcagctgctccccacacccagagcatgcaaggcttccctccaaacctg
ggctctgccttcagcactcctcagtcaccagcaaaagccttcccccctctttccacccaa
aaccagacaacaggtttcagtggcataggaggactctcttcccagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagctctgggccttcctgcagtgaac
aacgaccccttcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcggatttacaaccatccacca
catcccaccatgtctgtggatgaggtcttggaaatgctgcagaggttcaaggactccaac
atcaaacgggaacgagaggtgtttaactgcatgctgaggaacctgttcgaggagtaccgc
ttcttcccgcagtacccagacaaggagctgcacatcacggcctgcctctttgggggcatc
atcgagaagggactggtcacttacatggccctgggcctggccctgcgctacgttctcgaa
gccttacgaaagcctttcgcctccaaaatgtactattttggtattgctgcactagatagg
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttgcaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggatcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactattgtg
accacctcaaccaccaccaccgtggcaaaaaccatcacgatcacccgccccaccggagtc
agcttcaagaaggacgtgccgccttccattaacacaaccaacattgatacgctgctggta
gcaacagatcagacagagagaattgtggaacctccagagaatgtccaggaaaaaattgct
tttatcttcaataatctgtctcagtcaaatatgacacagaaggtggaagagctgaaggaa
acagtgaaagaagagttcatgccttgggtatcccagtatctcgtgatgaagagagtcagt
attgagcccaacttccacagcttgtactcaaacttcctcgacacactgaaaaacccagag
ttcaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagac
aaagctgcagccaacttctcagaccgctccttgttaaagaaccttggccactggctgggc
atgatcaccatggctaaaaacaaacccatcctgcacacggatttggatgtgaaatcactc
ctactggaagcatatgtgaagggacagcaggaattgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagctacaccaagaacacgatctaaaattgaatctgaag
tttgagatcgaggtgctctgcaagaatcttgcactggacatcaatgagctgaaacctggg
agcctcctgaaagataaggatcgcctgaaaaacctggatgagcagctgtctgctccgaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacctgcacagccacggtccctccccagccccagtacagttaccac
gacatcaacgtgtattctttagggggcttggctccacatatcaccttaaatcccacgatc
ccgctgttccaggcgcacccgcagctgaagcagtgcgtgcgtcaggccatcgagcgggcc
gtgcaggacctggtgcaccccgtggtggatcgctccatcaagatcgccatgaccacctgc
gagcagatcgtcaggaaggacttcgcgctggactcggaggagtcgcggatgcgcgtggcc
gcccaccacatgatgcgcaacctgacggcggggatggccatgatcacctgcagggagccg
ctgctcatgagcatcgccaccaacctgaagaacagcttcgccaccgcgctgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagttagcccaggataactgt
gagcttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgaatttgagctcagaaaacatgccaggcaggagggccgtcggtac
tgcgatcctgttgtgttaacttaccaggctgagaggatgccagagcagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcctgcctaccaacgacttaactcagcctacgggattcttggcccagcctatgaag
cagcaagcttgggctacagatgacgtagcacaaatctatgacaaatgtatgacagaactg
gagcagcacctgcagtccattccccacaccctggccatgaatcctcaggtccaagcgctg
cggagcctcttggaggccgtggtggtggctcggaactcccgcgatgctattgctgcgctg
gggctgctgcagaaggctgtggagggcttgctggatgccaccagcggggctgatgccgac
ctgctgctccgctaccgggagtgccacctgctcgtgctgaaggctctgcaggacggccgc
gcctacggctccccgtggtgcaacaagcagatcaccaggtgcctgatcgagtgcagagat
gagtacaagtacaacgtggaagccgtggagctgctgatccgcaatcacctcgtcaacatg
cagcagtacgacctgcacttggctcagtccatggagaatggcctgaactacatggctgtg
gcgtttgccatgcagttggtgaagatcctgctggtggatgagaggagcgtcgcccacgtg
acagaggcagatctgtttcacaccatcgagacactcatgagaatcaatgctcattccaga
ggaaatgccccagaaggattaccccagctgatggaagtggtccgatcgaactacgaagcg
atgatcgaccgcgctcacggaggccctaatttcatgatgcattcaggaatttcccaagcc
tctgagtatgatgaccccccaggcctgagggagaaggcagagtacctgctgagggagtgg
gtgaacctgtaccattcagcagcagcaggccgggacagcaccaaagccttctctgcgttt
gttggacagatgcaccagcaggggatcctgaaaacagatgacctcatcacccgtttcttc
cgcctgtgcaccgagatgtgcgtggagatcagctaccgtgccctggcagagcagcagcac
aaccctgcagccaaccccaccatgatcagagccaagtgctaccacaacctggacgccttc
gtgcggctgattgcgctgctggtgaagcactctggggaggcaaccaacacggtcaccaag
atcaacctcctcaacaaggttcttgggattgtggtgggagttctcctgcaagaccacgat
gtccggcagagtgagtttcagcagcttccttaccatcgcattttcatcatgttgctgttg
gaattaaatgctcctgagcatgtgctggagaccatcaacttccagacactcacggctttc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggccgatgtatgcccagttactgatcgatttgttcaagtacctggctcctttcctt
agaaatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttg
ctggtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgat
gtcatcccacctaactgtatccagctaaggaatctgatcctgagtgccttcccacggaac
atgaggcttccagaccctttcacccccaatctgaaggtggacatgctaagtgagattaac
attgctccacgaatcctcacgaatttcactggagtgatgccacctcagttcaagaaagat
ttggattcctatctcaaaacccgctctcctgtcaccttcttgtctgacctgcgcagcaac
ctgcaagtatcaaatgaacctggcaaccgctacaacatccagctgattaacgcgctggtg
ctctacgtaggtactcaagctattgcacacatccataacaaaggcagcaccccctctatg
agcaccatcacccactcagctcacatggacatcttccagaacctggcagtagacctggac
actgaaggccggtacctcttcctgaacgccattgccaaccagctgcgctaccccaacagc
cacacccactacttcagctgcaccatgctctacctgtttgcagaggccaacactgaggcc
atccaggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccc
tggggtctcctcattacattcattgagctgataaaaaacccagcgttcaagttctggaac
cacgagtttgttcactgcgctccagagattgagaagttgttccagtcggttgcccagtgc
tgcatggggcagaagcaggcccagcaggtgatggaaggcactggggccagttag
DBGET
integrated database retrieval system
