Epilithonimonas vandammei: EIB75_14855
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Entry
EIB75_14855 CDS
T06885
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eva
Epilithonimonas vandammei
Pathway
eva03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EIB75_14855 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eva03021
]
EIB75_14855 (rpoB)
03400 DNA repair and recombination proteins [BR:
eva03400
]
EIB75_14855 (rpoB)
Enzymes [BR:
eva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EIB75_14855 (rpoB)
Transcription machinery [BR:
eva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EIB75_14855 (rpoB)
DNA repair and recombination proteins [BR:
eva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EIB75_14855 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AZI56457
UniProt:
A0A3G8ZIA5
LinkDB
All DBs
Position
3108444..3112265
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTTSTTKGVERINFSSAKGKIITPDFLDIQIQSFKEFFQLDTLPEERQKESLYKTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKEILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETVLEKEHLDIILDSGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADAPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLGLNIPETTEVLTKEDIIAIVKHLIELVNSKAEVDDIDHLSNRRIKTVG
EQLSGQFGVGLSRIARTIKERMNVRDNEIFTPVDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGM
YAKINNLGFIETPYRKVEDGKVDLQAKPIYLNAEDEENRVIAQANVALSDDGNFETDRII
ARLDGDYPVVEPQQVDLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPIVGTGLEKQVAKDSRILINAEGNGVVEYVDAERIVIKYERSEEDDLVNFDSATKTYK
LTKFRKTNQSTTITLRPNVRVGDTVEKGQVLCDGYATENGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKK
LFSRNIKDKKKRSEEKIKLEEIENTYKAKFDDLRNTLIDKLNTLVSGKTSQGVKNDLEEE
MIGKGTKFTLKLLQSVEDYVNISGADWTVDADKNELIKQLIHNYKIKYNDLSGVKNREKF
ALSIGDELPAGIIKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGKQLGLKFATPIFDGASLDQITEYTEQAGLPKFG
NTHLYDGGTGERFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaacatcaacaactaagggagtggagagaattaatttctcttcggctaaa
ggaaaaattatcactcctgactttttggacatccaaatccagtctttcaaggagtttttc
cagctagacacacttcctgaagagcgacaaaaagaatcgctttacaaaacatttcaggaa
aattttccaattacagattccagaaaccaattcgtattggagtttttggattaccttgta
gattcgccacgttactctattgatgagtgtgtggaaagaggtttgacttattcagttcct
cttaaagctagacttaaactatattgtacagatccggaacatgaagatttccagactgtt
gtgcaagatgtttacctaggtccagttccttatatgacgccaagcggatctttcatcatt
aatggtgctgaaagggtaatcgtaacgcagcttcaccgttcacctggtgtattcttcgga
cagacttaccacgccaacggaactaaactttactattcaagaattatccctttcaaagga
tcttggatggaatttacaaccgatatcaacagcgtaatgtacgcctatatcgaccgtaag
aaaaaattacctttaacaactttacttagagcaatcggttatgaatctgataaggaaatc
cttcagatcttcgatcttgctgaggaagtgaaagtttccaaagcagcccttaagaaagta
gaaggccgaactcttgctgcgagagtactgaacacttggttcgaggatttcgtagacgaa
gatacaggtgaagtggtttctatcgaaagaaacgaaatcatcttggatagagaaactgtt
cttgaaaaagaacaccttgatattattttggattcaggcgttaagtctattctgattcac
aaagaaaattctaatgaattctctatcatccaaaatacactacagaaagacccgactaac
tctgaaaaagaagcagtggagtacatctaccgtcagctgagaaacgctgatgcaccggat
gaggaaactgcaagaggaatcattgaaaaattattcttctctgagcagcgttattcatta
ggcgaagttggtcgttacagattaaataaaaaattaggtcttaacattccggaaacgacg
gaagtactgaccaaggaagatatcatcgcaattgtaaaacacctgatcgagttggttaat
tccaaagcggaggtagatgatattgaccacctttctaacagacgtatcaaaactgtgggc
gagcaattgtcgggtcagtttggtgttggtctttccagaatcgcaagaactattaaggaa
agaatgaatgttagagataacgagatctttacaccggtagatttggttaatgccaagact
ttgacgtctgttattaactcgttcttcggaactaaccagctttctcagtttatggatcag
accaatccattgtcagaaatcacgcacaagcgtagattatctgcgctaggacctggtggt
ttatcaagagaaagagcaggtttcgaggttcgtgacgttcaccatacgcactacggacgt
atctgtccgattgaaacgccggaaggaccaaacatcggtttgatctcttctcttgggatg
tatgcgaaaatcaacaaccttggtttcatcgaaacaccttatagaaaagtagaggatgga
aaagtagatcttcaggctaagccaatttatcttaatgcggaggatgaagaaaaccgagta
attgctcaggctaacgttgctttgagtgatgatggtaacttcgaaacggacaggattatc
gcccgtttggatggtgactatcctgtagtagagcctcagcaagtagatttgattgacgtt
gcgccaaaccagatttccggtatttccgcttcattgattcctttcttggaacacgatgat
gcgaaccgtgctttgatgggttctaacatgatgcgtcaggccgttccattattgaagcca
caagcgccaatcgtgggtacaggtctggaaaaacaagttgcgaaagattctagaatcctt
atcaatgcagaaggaaatggagtagtggaatatgtggatgctgaaagaattgttattaag
tatgaaagaagcgaagaagatgatttggtaaacttcgattctgcaactaaaacttataaa
ttaactaagttcagaaaaacaaaccagagtacaactattacacttagacctaacgtaaga
gtgggggacacagtggaaaaaggacaggtgctttgtgacggttatgcaactgaaaacgga
gaattagctcttggtagaaacttagtagttgcgtttatgccttggaaaggttataacttc
gaggatgcgattgtaatcaatgaaaaagtagttcgtgaggactggtttacttcaatccac
gtagatgagtattctcttgaagttcgtgataccaaactaggtatggaagaactgacagca
gatattcctaacgtttctgaagaagccactaaagatcttgatgagaacggtatgatccgt
atcggagcagaagtgaagcctggcgatatccttatcgggaaaatcacaccaaaaggtgaa
tctgatcctactccggaagaaaaacttcttagagcgatcttcggggataaagcgggtgat
gtaaaagatgcttctcttaaagcagattcttctcttagaggtgttgtaatcaacaaaaaa
ttgttctccagaaacatcaaggacaaaaagaaaagaagcgaagagaaaatcaaactggaa
gaaatcgaaaatacttataaagctaagttcgatgacttaagaaacactttgattgacaaa
ctaaacacgttggtttccggtaaaacgtctcaaggggtgaaaaatgaccttgaagaagaa
atgatcggaaaaggaactaagtttactttgaagttgcttcagtctgttgaggattatgta
aacatcagtggtgcagactggactgttgatgcagataagaatgaattgatcaagcaattg
attcacaactataaaattaaatacaatgatctttccggggttaaaaaccgtgagaaattt
gcattatctatcggagacgagcttccggctggtatcatcaaattagctaaagtttacatc
gctaagaaacgtaaactgaatgtgggtgataaaatggcgggtcgtcacggtaacaaaggt
attgtgtcaagaatcgttcgtgaagaagatatgccgttcctagaggatggaacaccggta
gatatcgtattgaatccacttggggtaccttcccgtatgaacatcggtcagatctatgaa
actgttcttggatgggcaggtaagcagcttggactaaaattcgcaacaccgatcttcgat
ggagctagtttagatcaaattaccgaatatacagaacaagccggtcttccgaagtttgga
aatactcacctttacgacggtggaacaggggagagatttacgcagcctgcaacggttggt
gtgatctatatgctgaagttaggacacatggtagatgataagatgcacgcacgttctatc
ggaccgtactcattgattacgcagcagccattaggaggtaaagcgcaattcggaggtcag
agattcggagagatggaggtttgggctcttgaagcattcggtgcatccaatattcttaga
gaaatcttgactgtgaagtcggatgacgtgattggtagagcaaaaacttatgaagcaatc
gcaaaaggtgaagcaatgccagaacctggtattccagaatctttcaacgttttacttcac
gagttacaaggtcttggacttgatgtaagacttgaagaataa
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integrated database retrieval system
