Exiguobacterium sp. N4-1P: A0126_00485
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Entry
A0126_00485 CDS
T10338
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
exi Exiguobacterium sp. N4-1P
Pathway
exi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
exi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A0126_00485 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
exi03021
]
A0126_00485 (rpoB)
03400 DNA repair and recombination proteins [BR:
exi03400
]
A0126_00485 (rpoB)
Enzymes [BR:
exi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A0126_00485 (rpoB)
Transcription machinery [BR:
exi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A0126_00485 (rpoB)
DNA repair and recombination proteins [BR:
exi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A0126_00485 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ASI36927
LinkDB
All DBs
Position
82486..86043
Genome browser
AA seq
1185 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTNSYEWFLREGLREMFHDISPISDFTG
NLVLEFIDYSLGEPKYSIDESKERDVTYSAPLRVKVRLQNKETGELKEQEVFMGDFPLMT
ESGTFIINGAERVIVSQLVRSPSVYYNNKLDKNGKRGFSATVIPNRGAWLELETDAKDIV
YVRIDRTRKIPVTVLLRALGFGTDQEIIDLLGDDEYLRNSLEKDNTESTEKALIEIYERL
RPGEPPTVENAKALLVSRFFDPKRYDLANVGRYKINKKLHLKNRLFGQKLAETLVDPETG
EVIAEAGTVLDRRMLDKVLPFLEGSVGYIEATPTGGVTQGEAFNLQSIKVFAPDDAEGER
IINIIGNGNIDRDIKHITPADMIAAINYFFNLLHEVGTTDDIDHLGNRRLRSVGELLQNQ
FRIGLSRMERVVKERMSIQDQNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAE
LTHKRRLSALGPGGLTRERAGFEVRDVHYSHYSRMCPIETPEGPNIGLINSLSSFAKVNE
YGFIEAPYRRVNPETGVVTDEIHYMTADEEDLYVVAQANMLLTEEKTFQDTHVLSRFRGQ
NLSVEPSRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLDPESPIVG
TGMEYVSAKDSGAAVVAKHSGIAERVTAREILVRRTTEVDGNIVQGELDRYKIQKFIRSN
QGTCYNQKPIIKAGDPVDKGEILADGPSMDGGELALGRNVLVGFMTWDGYNYEDAVIMSE
RLVKDDVYTSIHIEEYECESRDTKLGPEEITRDIPNVGDDALKNLDDRGIIRVGAEVKDG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGDGIILDVKIFDRDNGD
ELSPGVNQLIRAYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYMPDGTPIDIMLNP
LGVPSRMNIGQLLELHLGMAARQLGIKVASPVFDGAREEDVWATIEEAGMDRDAKTVLYD
GRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTIKSDDTIGRVKAYEAIVKGENVPQPGVPESFRVLIKELQSLG
MDVKMMSAEDEEIEMKDDDEDNIPNATPALEEVQAPVAPVVTEEE
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttgactggtcaacttgttcagtacggtcgtcaccgtcagagaagaagctatgcacgtatc
agcgaagtattagaacttccaaatctaattgagattcaaacgaattcatacgaatggttc
ctacgggaaggtcttcgtgagatgtttcatgacatttcgccgatttccgacttcacagga
aatctcgtattagaattcatcgattactcgctcggtgagccgaagtattcgattgatgaa
tcgaaagaacgcgacgtgacctattcggcaccactgcgcgttaaagtccgtcttcaaaac
aaagagacgggtgaattgaaggaacaagaagtcttcatgggtgacttcccgcttatgacg
gagtcgggaacattcattattaatggtgcggaacgagttatcgtttctcagcttgttcgt
tcgccaagtgtgtattacaacaataagttagataagaacggtaaacgtggattctcggca
acggtcatcccgaaccgtggagcatggctcgaacttgagacagatgcgaaagatatcgta
tatgtccgaatcgaccgcacgcgtaagattcctgtaacggttcttttacgtgctcttggt
ttcggtacggatcaggaaatcatcgatctccttggagatgatgagtacctccggaattcg
cttgaaaaagataatacagaatcaacggaaaaagccctcatcgaaatctatgagcgtcta
cgcccgggtgagccaccgacagttgaaaatgcgaaagcacttctcgtgtcacggttcttc
gacccgaaacgttacgacttggcaaacgttggtcgctataaaatcaataagaagcttcat
ctgaagaatcgtctgttcggacaaaagcttgcggaaacgctcgttgaccctgaaacaggt
gaagtaatcgcagaagctggaacggttcttgaccgtcgtatgctcgacaaagtcttgcca
ttccttgaaggatctgtcggttacatcgaagcgacgccaactggcggcgtaacacaaggc
gaagccttcaacttacagtcgatcaaggtgttcgcaccggacgatgctgaaggtgaacgc
atcatcaatatcatcggtaacggtaacatcgatcgtgacatcaagcacattacgcctgct
gacatgattgctgcaatcaactacttcttcaacttgttgcatgaagtaggaacaacagac
gatatcgaccacctcggtaaccgtcgtctccgttctgtcggtgaattgctccaaaaccag
ttccgtattggtctttcacgtatggaacgtgtcgttaaggaacgtatgtcgattcaagat
cagaatgcgatcacgccacaggcattgatcaacattcgtcctgttatcgcgtcaattaaa
gagttcttcggtagctcacagttatcacagttcatggaccaaacaaacccgctcgctgag
ttgacgcacaaacgtcgtctatctgctctcggacccggtggtttgacacgtgagcgtgct
ggctttgaagttcgagatgttcactactcgcattattcccgtatgtgtccaatcgaaacg
ccagagggaccaaacatcggtttgatcaactcactgtcttcgttcgcgaaagtcaatgag
tatggtttcatcgaagcaccataccgccgtgtcaatccggaaacgggtgttgtcacggat
gaaattcactacatgacggcagacgaagaagatctctacgtcgttgcgcaggcaaacatg
ttgttgacggaagagaagacgttccaagatacacacgtcctctcacgtttccgtggacaa
aacttgtctgttgagccatcacgtgtcgattacatggatgtttctccgaaacaggttgtt
tcggcagcgacagcatgtattccgttccttgagaacgatgactcgaaccgtgccctcatg
ggagcaaacatgcaacgtcaggccgtaccacttctcgatccagaatctccgattgttgga
actgggatggagtacgtgtctgcgaaagactcaggagctgccgttgttgcaaaacactct
ggtatcgctgagcgcgtaacggctcgtgaaatccttgtccgtcgtacgacggaagtcgat
ggcaacatcgttcaaggtgaacttgatcgttataaaatccaaaaattcattcgttctaac
caaggaacgtgctataaccaaaaaccaatcatcaaagcaggcgatcctgtcgataaaggc
gagattcttgcagatggtccatcaatggacggtggggaacttgcgctcggtcgtaacgta
ctcgtcggtttcatgacatgggatggttacaactacgaggatgccgtcatcatgagcgaa
cgtcttgtgaaagatgatgtctacacatcgatccacattgaggaatacgaatgtgaatca
cgcgatacaaaactcggaccggaagaaatcactcgtgatattccgaacgtcggtgacgac
gccctgaaaaacctcgacgaccgcggaatcattcgtgtcggtgctgaagtaaaagatggg
gatatcttagtcggtaaagttacacctaagggcgtaacggaattgacagctgaagaacgt
ctgttacatgcgatcttcggtgaaaaagcacgtgaagtgcgtgatacatcactccgtgta
ccacacggcggcgacggtatcatccttgacgtcaaaatcttcgatcgtgataacggcgac
gaactatctcctggtgtcaaccagttgatccgtgcgtacatcgttcaaaaacgtaagatt
cacgaaggagataaaatggcaggtcgtcacggtaacaaaggtgttatctcacgtatcttg
ccagaagaagacatgccgtacatgccagacggcacaccaatcgacatcatgttgaaccca
cttggtgtaccatcacggatgaacatcgggcagttgctcgagcttcaccttggtatggct
gcacgccaactcggaatcaaagtcgcatcaccggtatttgatggtgcacgtgaggaagat
gtttgggcaacgattgaagaagccggtatggatcgcgacgcgaagactgttctttatgac
ggtcgttcgggtgaagcgtttgataaccgcatctcggtcggtgtcatgtatatgattaaa
ctcgcccacatggtcgatgataagcttcacgcacgttcgacgggtccttactcactcgtt
acgcaacagccgctcggtggtaaagcccagttcggtggacagcgtttcggagagatggaa
gtttgggcacttgaagcatatggtgccgcgtatacactccaagagatcttaacgatcaaa
tcggatgatacgatcggtcgtgttaaagcgtatgaagcgatcgttaaaggcgaaaatgta
ccgcaaccgggcgtaccggaatcgttccgagttctcattaaagaacttcaatcacttggt
atggacgttaagatgatgtctgctgaggacgaagagatcgaaatgaaggacgacgacgag
gacaacatcccgaacgcgactccagcactcgaagaagttcaagcgcctgtcgcaccagtt
gttactgaagaggaataa
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