Ficedula albicollis (collared flycatcher): 101806296
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Entry
101806296 CDS
T02815
Symbol
SF3B1
Name
(RefSeq) splicing factor 3b subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101806296 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101806296 (SF3B1)
03036 Chromosome and associated proteins [BR:
fab03036
]
101806296 (SF3B1)
Spliceosome [BR:
fab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101806296 (SF3B1)
Complex B
101806296 (SF3B1)
Complex C
U2 SnRNP specific factors
101806296 (SF3B1)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101806296 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
Motif
Other DBs
NCBI-GeneID:
101806296
NCBI-ProteinID:
XP_005049278
UniProt:
U3JNV2
LinkDB
All DBs
Position
7:complement(9996978..10020304)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatatcgaagcacaaattagagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtgacttccattgcagca
actgaattggaagatgatgacgatgactacccttccacaagtttgcttggtcagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcggatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcacctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacgtacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaaattgtccagctgggatcaagcagag
actcctggacacaccccatctctgcgatgggatgaaactccaggccgtgcaaagggtagt
gaaactccaggtgccaccccaggctctaaaatctgggatccaactcccagtcatacacca
gcaggagctgcaacacccggcagggacacacctggtcacgcaacaccaggccatggaggt
gccacttccagtgcacggaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccgggccatggcagtggctgggctgagacacctcgtacagatagaggtggtgactccatt
ggtgagacaccaaccccaggagcgagcaaaaggaagtcacgttgggatgaaacacctgcc
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaacccctaccccaggtcacatcatgagcatgactcctgaacaactg
caggcttggcgctgggagagggaaattgatgagagaaacagacctctttctgatgaggaa
ttggatgctatgttccctgaaggatataaggttctcccacccccagctggttacgtgccc
atccgcactcccgctcggaagctcacagcgactccaacacccctgggggggatgacagga
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggcaac
ctgccattcctgaaaccagatgatatccagtacttcgacaagctgctggttgatgttgat
gaatcaactctgagtcctgaggaacagaaggaaagaaaaataatgaaattacttctgaaa
ataaagaacggcacacctcccatgcgaaaggctgcgttgcggcaaattactgataaagct
cgggaattcggagcagggccactattcaatcagatcctgcctctgctgatgtcaccaaca
ctcgaagatcaggagcgtcacttgcttgtcaaagtcattgacagaattctttacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttccaacttggctaaggct
gcgggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtcagaaatacaacagctcgagcctttgctgttgttgcatctgctctgggcattccttct
ctgttaccgttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccagacacact
ggcatcaagattgtgcagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgaacatgggctggtggatgagcagcagaaagttcgcacc
atcagcgctttggccattgctgctttggctgaggcagccactccctatggtatcgagtca
tttgattctgtcctgaagcccttgtggaagggtatacgtcagcacagaggaaagggtttg
gctgcgtttttgaaggcgattggttacctgattccactcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtattgaaggtggtaaagcagtgttgtggtacagatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacgactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaggatgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggggcagcagac
attgatcacaagctggaagagcagctcattgatggtattttgtacgcctttcaggagcag
acaacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggctgctgacctgatctctcgtactgcggtggtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatactcggagcgcttaaggctattgtcaatgtt
ataggtatgcacaagatgacgccaccaatcaaagacctgctgccacggctgacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatcagaagagccacagtgaacacctttggttat
attgcaaaagctattggacctcacgacgtattggccacactgctaaacaacttgaaagta
caggaaaggcagaacagagtatgtactacagtagcaattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaagtctctttcttttctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagagatcttgta
cacagacaaactgccagtgctgtggtgcagcacatgtcccttggtgtttatgggttcggc
tgtgaagattcccttaatcacttgttaaattatgtgtggcccaatgtgtttgaaacctct
cctcatgtcatccaggcagttatgggggctctggagggcctcagagtcgctattgggccc
tgcaggatgttacagtactgtttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctataattcaatctacatcggatcacaggatgctctgatagcacat
tatccaagaatctacaatgatgataagaacacgtatattcgttatgaacttgattacatc
ttataa
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integrated database retrieval system
