Ficedula albicollis (collared flycatcher): 101816260
Help
Entry
101816260 CDS
T02815
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101816260 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101816260 (CNOT1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101816260 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101816260 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
101816260
NCBI-ProteinID:
XP_005052538
UniProt:
A0A803V0X9
LinkDB
All DBs
Position
11:complement(7964236..8019993)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPTLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPDKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
LAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcacattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcgtacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcgccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcatttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgcccc
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgtggaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacagacggaattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagtgatggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctaccctggacttcaaagtagtaacgtatgaa
ttggaccatccaggatttcagattcgtgatagcaagggcctgcatattgtcgtttttggc
atccagagagggctgggcatggaggtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgactg
gcagaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcactgc
ccagatatgctggtattggccttattgcagatcaacacgtcctggcataccttgcgccat
gaactcatctccacactcatgccaattttccttggcaaccatcccaactccgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgaccaagcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagataaggatcagcccaaaagt
gctcaacttcctccagaaactttggcgactatgttggcctgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcgacagcccccacctggagtcatgcccaaaggacgcccgcccagcgcc
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctt
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagcactcctcagtcaccagcaaaagcattcccacctctttccacccaa
aaccagacaactggtttcagtggcatcggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaggaaatagatgatgaggcaaacagctacttccagcgcatttacaaccatccacca
cacccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgt
ttctttccccagtacccagataaagagctgcacataacagcctgtctcttcgggggcatc
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggtcaagtcagcactatagtg
accacctcaaccaccaccaccgtggcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcagacagagaggattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagt
attgagcctaactttcacagcttatattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtactattgacatcagat
aaagctgcagccaacttctcagaccgttccttgttgaagaaccttggtcactggctggga
atgataacaatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcgcta
ctactggaagcatatgttaagggacagcaggaattgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccgtggacaatg
gccattatgaatgttttagctgagctacatcaggaacatgacctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcgctagacatcaacgagctgaagcctgga
agtctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttatcat
gacatcaatgtctattctttaggagggttggctccacacattaccttaaatccaacgatc
ccgctgttccaagcccacccacagctgaagcagtgtgtgcggcaggcgattgagcgcgca
gtgcaggacctcgtccatccagtggtggacagatccatcaagattgccatgacaacctgt
gaacagatagtcaggaaggactttgccctggattcggaggagtcacggatgcgtgtggct
gctcaccacatgatgaggaacctgactgctgggatggccatgattacctgcagagagcct
ttgctgatgagcatagctaccaacttgaaaaatagctttgctactgcactgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagttagcacaggataactgt
gagctcgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggcttgcaactgaatttgagctcagaaagcatgctaggcaagaggggcgtcgctac
tgtgatcctgttgtgttaacgtaccaggctgaacggatgccagagcagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagaatttgcacgcaatgtccct
ggcttcttacccaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
caagcttgggctacagatgatgtagcacaaatttatgacaaatgtatgacagaactggag
cagcacctgcagtccattccacacaccttggccatgaatcctcaagttcaagcattgcgt
agcctcttggaggcggtggtggtggctcggaactcccgggatgctattgctgcccttgga
ctactgcagaaggctgtagagggcttgctggatgccaccagtggggctgatgctgacctc
ctgctccgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggatggccgcgcc
tatgggtctccgtggtgtaacaagcaaatcactaggtgcctgatcgaatgcagagacgag
tacaagtacaatgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcag
cagtatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtaaagatcttgttggtggatgagagaagcgttgcccatgtaaca
gaagcagatctgtttcacaccattgagacactcatgagaataaatgctcattccagagga
aacgccccggaaggattaccccagctaatggaagtggtccgatcaaactatgaagcaatg
attgaccgtgctcacggaggtcctaatttcatgatgcattcaggaatttctcaagcttct
gagtatgatgacccaccaggcctgagggagaaggcagaatacttgctgagggagtgggtg
aacctctaccattcagctgcagcaggccgtgacagtaccaaagcgttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaggggatcctgaaaacagatgac
ctgatcacccgttttttccgtctttgcactgaaatgtgtgttgagatcagctatcgagcc
ctggccgagcagcagcacaatcctgcagccaaccccaccatgattcgagccaagtgctac
cacaacctggatgcctttgtgcgactcattgcactgctggtgaagcactctggggaggca
accaacacagtcacaaagatcaacctcctgaataaggttcttggtattgtggtgggagtt
cttctgcaagaccatgatgttcggcagagtgagtttcagcaacttccttaccatcgcatt
ttcatcatgttgttgttggaattaaatgctcctgagcatgtgctggagaccatcaacttc
cagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctccaggt
tttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctggca
catacaccacagcagaagggttggcctatgtatgcccagttgttaatcgatctgttcaag
tatttggctcctttccttaggaatgtggaactcaccaaacctatgcaaattctttacaag
ggcactctgcgtgtgttgctggtcttgttgcatgatttcccagaatttctctgtgactac
cactatgggttctgtgatgtgatcccacctaactgtattcagctaaggaatctgatcctg
agtgccttcccacggaacatgaggcttccagaccctttcacccccaacctaaaggtggac
atgttaagtgagattaatattgctccacgaatacttacaaatttcactggagtgatgcca
cctcagttcaagaaagacttggattcctatctcaaaacccgttctccagtcacctttttg
tctgacttgcgaagcaacctacaagtatcaaatgaacctggcaaccgctacaacatccag
ctgataaatgcactggtgctctatgttggtactcaagctattgcacacattcacaacaaa
ggcagcacaccctccatgagcaccattacccactcagctcacatggacatcttccagaat
ttggcagtagacctggacactgaaggccggtacctcttcctgaacgccatcgccaaccag
ctgcgctaccccaacagccacacccactacttcagctgcaccatgctctacctgtttgct
gaggccaacacagaggccatccaggagcagatcaccagggttctcttggaacgactgatt
gtaaataggcctcatccctggggtctccttattacgttcattgagctgataaaaaatcca
gcctttaagttctggaaccatgagtttgttcactgcgctccagaaattgagaagttgttc
cagtcggttgcacagtgctgcatggggcagaagcaggcccagcaagttatggaagggact
ggtgccagttag
DBGET
integrated database retrieval system
