Ficedula albicollis (collared flycatcher): 101819820
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Entry
101819820 CDS
T02815
Symbol
COL6A1
Name
(RefSeq) collagen type VI alpha 1 chain
KO
K06238
collagen type VI alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04510
Focal adhesion
fab04512
ECM-receptor interaction
fab04518
Integrin signaling
fab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101819820 (COL6A1)
04518 Integrin signaling
101819820 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101819820 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101819820 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
fab04147
]
101819820 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101819820 (COL6A1)
Exosome [BR:
fab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101819820 (COL6A1)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101819820 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
101819820 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
DUF1194
VWA_3
vWA-TerF-like
DUF5507
Motif
Other DBs
NCBI-GeneID:
101819820
NCBI-ProteinID:
XP_005048987
LinkDB
All DBs
Position
7:complement(172868..199748)
Genome browser
AA seq
1037 aa
AA seq
DB search
MKLRDFLLTLLLPAGFLWEGSCAQRPEIITQVSSAEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTRRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNR
VSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFRGGGGGGGAYRRNFTATSLKPTR
EMDVEETINTIIDMIKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAG
DPGRPGDMGPVGYQGMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPG
CKGSPGFDGAQGPPGPKGDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNRGEPG
PAGETGDEGALGEDGPPGERGSNGERGPPGSPGERGPRGQPGEPGPSGDQGREGPLGPPG
DQGEPGPPGPKGYRGDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGA
PGQPGDRGNPGINGTKGYVGPKGDEGEAGDPGNDNLIPGPSGIKGAKGHRGREGPPGPPG
PVGPPGPDECEILDIIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDR
LSKDERVKFEAGESRVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTG
EALQFTKDNLLRRFTSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPP
NPDHLNDIACLSRPTRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGP
ADITLLVDSSTSVGSKNFETTKKFVKQLAGRFLEAGKPADDSVRISVVQYSGRNQQKVEA
QFQYNYTVIAKAIDSMEFMNDATDVNSALQFITELYRRSARAAAKKRVLVFSDGHSQGIT
ARAIERAVQDAQRADIEIYVLAVGSQANEPNIRVLVTGKSTDYDVAYGERHLFRVPDYTS
LLRGVFYQTVSRKIAVD
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgagactttctgctcactctcctgctgccggccggcttcctgtgggaaggc
tcatgtgctcagcgcccagaaatcatcacccaagtctcaagcgcagaagactgccctgtg
gacctgttcttcgtcctggacacctcagagagtgttgccctgagagtgaaaccctttggg
gacctggttacacaagtgaaagatttcaccaaccggttcattgataagctgacgaggagg
tactaccgctgcgaccggaacctggtgtggaacgcaggagcactgcactacagcgacgag
gtggtgctcatcaagagcctcacgccaatgcccagcgggcagagcgagctcaagaaccgc
gtgtcagccgtcaactacatcgggaagggcacctacaccgactgtgccatcaagcgcggc
atcgaggagctgctcatcggtggttcccatcacaaggaaaataaatacctgattgtggtg
actgatggacatcccttggaaggctacaaggagccctgcggaggcctggatgatgccgcc
aatgaagccaaactcctggggatcaaagtgttctctgttgccatctcacccaaccacttg
gaccagcggctgaacatcatcgccacggaccacgcctaccgccgcaacttcagggggggg
ggggggggggggggcgcctaccgccgcaacttcaccgccaccagcctgaagcccacccgg
gagatggatgtggaggagaccatcaacaccatcatcgacatgattaaactcaacacggag
caatcgtgctgctccttcgagtgccagcctccccgagggccccccggacctcctggtgac
cctggccatgagggagaacgaggcaagccaggtcttcccggccagaaaggagaggctgga
gacccaggcaggccaggagacatgggacctgttggctaccaaggaatgaagggtgacaaa
ggaagccgaggagaaaagggctcaaggggagccaaaggagccaagggtgagaaaggcaga
cgtggaatcgatggcattgatggcatgaagggtgaagctggataccctggattacctggc
tgcaaaggctcacctggattcgatggagctcaaggcccacccggacccaagggagatcct
ggtgcttttggacccaagggcgccaagggggagcctggtaatgacggaaagcccggccga
caggggattcctggcaaccctggagagaagggtgctcctgggaaccggggtgagcctgga
ccggcaggagagactggtgacgagggtgctctaggtgaggatggtcctcctggagaacgg
ggcagcaatggagagaggggacccccgggttcgccaggtgaacgcgggccaagaggacag
ccgggagagcctggaccatctggtgaccaagggcgggaaggaccccttggaccacccggc
gaccagggtgagcctggacccccaggacccaaaggctacagaggagatgacggccccccc
ggcagtgagggcccgaagggactgcctggagcacctgggctgcctggggaccctgggctg
atgggagaaaggggggaggatggtcctcctgggaatggcacaattggatttacaggtgcc
ccagggcagccaggagacagaggcaaccctggcattaacggaacaaaaggctatgtcgga
cctaaaggtgatgaaggggaagctggtgaccctggcaatgataacctgatccctgggccc
agtggcatcaaaggagcaaagggccacaggggacgtgaaggtcccccgggaccgccagga
cccgtggggcctccaggaccagatgaatgtgaaatcttggacatcatcatgaagatgtgt
tcttgctgcgagtgcacctgtggtcccgtcgacctcctgtttgtgttggacagctcagag
agcattggcctgcagaacttccagattgccaaggacttcatcatcaaagtcattgaccgc
ttgagcaaggatgagagggtcaagtttgaagctggggagtcccgtgtgggcgttgtgcag
tacagccatgacaacacgcaggagctggtggccatgggggatgccaacatcgacaacatc
ggggcgctcaagcaggcagtcaagaacctgcagtggatcgccgggggcacctacactggg
gaggccctgcagttcaccaaggacaacctgctgcggaggttcacgtccgacaagcgcgtg
gccatcgtcataacggacgggcgctctgacaccctgcgggaccccaccccactcaactcc
ctgtgcgatgtcaccccggtggtttcccttgggatcggtgacattttccggaaccctcca
aatccagatcacctgaatgacatcgcttgtttaagcagaccaaccaggccaggactgtcc
attcaaagggacaactatgccgagctcctggatgacaccttcttgcagaacatcacctcg
tatgtctgccaagagaaaaaatgtcctgactacacctgcccaatcaccttcaccgggcca
gcagacatcacgctgctggtggacagctccaccagtgtggggagcaagaactttgagacc
accaagaagtttgtgaagcagctggcagggcggttcctggaggctggcaagccggccgat
gattctgtgcgcatctcggtggtgcagtacagcggccggaaccagcagaaagtggaagct
cagttccagtacaactacacagtcattgccaaggccatcgacagcatggagttcatgaac
gatgccacagacgtgaactccgctctgcagttcatcacggagctgtaccggcgctctgcc
cgcgccgcagccaagaagagggtgctggtgttttctgatggacactcccaagggatcacc
gccagggccatcgagagggctgtgcaggacgcacagagggctgacattgagatctacgtg
ctggcagtgggcagccaagccaatgagcccaacatccgtgtcctggtcacagggaagagc
acggattatgatgtggcttacggggagcggcaccttttccgcgtgcccgactacacttct
ctgctgcgtggtgtcttctaccaaactgtctccaggaagatagctgttgactga
DBGET
integrated database retrieval system
