Flavobacterium album: HYN59_16420
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Entry
HYN59_16420 CDS
T06577
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
falb
Flavobacterium album
Pathway
falb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
falb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYN59_16420 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
falb03400
]
HYN59_16420 (ligD)
Enzymes [BR:
falb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYN59_16420 (ligD)
DNA repair and recombination proteins [BR:
falb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYN59_16420 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AWH86595
UniProt:
A0A2S1R1S8
LinkDB
All DBs
Position
3647081..3649099
Genome browser
AA seq
672 aa
AA seq
DB search
MRKSATISPEKGAPAKMPTNVKPMLATLVKEPFNEPGWSYEVKWDGYRALAYIKSGEAEL
LSRNNKSFTEKYYPIAAAMGKWDFDAVLDGELLVIKKNGKADFGALQNWRSEADGDLVYY
AFDLLWYDGKDITGLPLSERQAILKDILPADDDRIRLSEVFTSGGLDFFAAAQKMGLEGI
MAKKSDSLYTPDSRSKEWLKIKVNQRQEVVIGGFTNNEGSSKLFSSLLLGVYKNGKLDYV
GKVGTGFTVKMQKEMMEAFRPFITKKSPFAYEPDINKPSRFRPDPPKAVATWLKPELVCE
VSFTEVTSDGVFRHPSFEGMRTDKRASEVVLETAVETEDVTSATKNGDTALVKAPEAADK
RTLLNPNEESQVKAINGHNLKFSNLSKVYWPEEGYTKRDMLNYYYQAAEFILPYLKDRPL
TLYRFPNGIHGKSFYQKDVKGKAPEWAKTFPYTTSDGEDKEFLVGSDEYTLLWMASLGCI
EMNPWFSRVQHPDHPDYCVIDLDPADSTTFEQVVQAALEVKKVLDEIGVPGFPKTSGSTG
IHIYIPLGAKYTYDESQLFGRVVVSIVQKRLSSFTSIERQIKNREGKMYLDFLQNRPNAT
ISCPYSLRPKPGATVSMPLHWEEVKPGLSMKDFTIKNAIARARGEGDLFKGTFGKGIDMK
KALSKAQGLLEA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagtcagctacgatatcccctgaaaaaggcgctcctgcaaaaatgcccaccaat
gtaaagcccatgctggctacgttggtgaaggagccgtttaacgaaccgggatggagctat
gaggtaaaatgggacgggtacagggcgctggcttatatcaaaagcggggaagcagaacta
ttgtcgcgaaataataaatcgtttaccgaaaaatactatcctatcgccgcagccatggga
aaatgggattttgatgcggtgctggacggtgagctgcttgtcatcaaaaaaaacgggaaa
gccgattttggtgcgttacaaaactggcgcagtgaagcggatggcgaccttgtatattat
gccttcgacctgctgtggtatgatggaaaggacatcacagggcttccgctatcggaaagg
caggctatcctgaaagatatattgcctgcggatgacgaccgcatacgccttagcgaggta
tttaccagcggtggcctcgatttttttgcagcagcgcaaaaaatgggactggaaggaatt
atggctaaaaagtcggatagcctgtacacacctgacagccgctcgaaagaatggctcaaa
ataaaggtgaaccaaaggcaggaagttgttattggtgggtttaccaacaacgaaggttcg
tcaaagctgttcagctcgcttttgctgggtgtttataaaaacgggaagctggactatgtt
ggtaaggttggcacaggctttactgtgaaaatgcagaaggaaatgatggaggctttccgc
ccgtttataaccaagaaaagcccgtttgcttatgaaccggatatcaacaagccttcacgg
ttccgccccgatccgccgaaagccgttgccacctggctgaaaccagaactcgtttgcgaa
gtgagctttaccgaagtgacatcggacggcgttttcaggcatccatcatttgaaggaatg
cgtaccgacaaaagagcctctgaagtcgtactggaaacggctgtagaaacagaagacgta
acatctgcaacaaaaaatggcgatacagcccttgtaaaagcacccgaagcagccgataag
cgtacgctgctcaaccctaatgaagaatcgcaggtaaaggccattaatgggcataacctg
aaattttcgaacctcagcaaagtgtactggcctgaagaaggctataccaaacgcgatatg
ctgaactattattaccaggctgccgagtttatcctgccctacctgaaggaccgcccgctg
acattataccgcttcccgaacgggattcatgggaaaagcttttaccagaaagacgtaaaa
ggcaaagctcccgaatgggcaaaaacatttccgtataccaccagcgatggcgaggataag
gaattcctggtaggcagcgacgagtatacactgctgtggatggcatcgctggggtgcatt
gaaatgaatccctggttcagcagggtgcagcatcctgaccatcccgattattgtgttatc
gacctggatcccgcggacagtacaacttttgagcaggtggtacaggcagcccttgaagtg
aaaaaagtgctggacgaaataggtgtccccggtttcccgaaaacatccgggtcaacagga
atacacatttatatcccgcttggcgcgaaatacacgtatgacgaatcacagttgttcgga
agggtggtcgtctccatcgtgcaaaaacgtttatcgagcttcaccagcattgagcggcag
ataaagaaccgggaaggcaagatgtacctcgactttttgcagaaccgcccgaatgcaacg
atatcctgcccttattcccttcgcccaaaaccgggagcaaccgtatcgatgccattgcat
tgggaagaagtaaaaccgggactgtctatgaaagattttaccataaaaaatgctattgcg
cgggcacggggcgagggcgacctttttaaaggcacgtttgggaaaggtatcgacatgaaa
aaagccctgagcaaagcgcagggccttttggaagcgtag
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