Falsirhodobacter algicola: GR316_03795
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Entry
GR316_03795 CDS
T07373
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fap
Falsirhodobacter algicola
Pathway
fap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GR316_03795 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fap03400
]
GR316_03795 (mfd)
Enzymes [BR:
fap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GR316_03795 (mfd)
DNA repair and recombination proteins [BR:
fap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GR316_03795 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
AAA_16
UB2H
RecG_dom3_C
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QUS35467
UniProt:
A0A8J8MS53
LinkDB
All DBs
Position
complement(740210..743665)
Genome browser
AA seq
1151 aa
AA seq
DB search
MADRIILGGAPEGFDARLLAKELAKGAPVIHVARDDKRLEAMRTALSVMAPDVPVLEFPA
WDCLPYDRISPNPLIAARRMATLAALAQGRPGAFVLLTTLNAATQKVPSRATVAGASFSA
QVGDRIDEKRLRDYLGRMGYSPVTTVAEPGDFAIRGGIIDIYPPESDPVRLDLFGDTLDG
LRQFDAESQRSTQKLQTLDLAPVSEVMLDEGAITRFRQNYRVEFGAGGANDPLYEAVSAG
RKHQGMEHWLPFFHDRLETVFDYMPDAAVMLDDQVTPARLSRWEGIADQYDARREAMGQK
NRVDTVYKPVAPDALYLDDAAWAASLAPHRTVQLSPLAQAPGPGVLDAGGRLGRNFSPER
QQENVSIFEALAAHIRTLRKDAQVVVASWSEGARERLKGLLEDQDLSAASVADFRQVKDG
KGGLFLIVWPLESGFIAPGLAVISEQDVLGDRLVGKPRKKRKSDNFLREVDTLSPGDLVV
HVEHGVGRYMGLETLRVPQPPRNRPGPPHDYLNLVYADDAKLYLPVENIELLSRYGHEEG
LLDKLGGGAWQAKKARLKERIREIADRLMRIAAERHLRHAPILEAPHQMWEAFAARFPYQ
ETDDQLSAIADVVGDLEAGRPMDRLVVGDVGFGKTEVAMRAAFVAAMAGMQVAVICPTTL
LARQHFRSFAERFRGFPFKVRQLSRFVPAKEAAETRAGLADGTVDICVGTHALLAKGVKI
KNLGLLVIDEEQHFGVSHKERLKEMRSEIHVLTLTATPIPRTLQLSLTGVRDLSIIATPP
VDRLAIRTYVSEFDTVTIREALLRERYRGGQSFFVVPRVSDLPEIEAFLREQVPEVTFTI
ANGQMAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLSQLYQIR
GRVGRAKTRAYCYLTTKPRAALTPQAQKRLRLLSSLDSLGAGFNLASHDLDLRGAGNLLG
EEQSGHIKEVGYELYQNMLEETIQKIRSGEIGGLSEMDEQWAPQINIGVPVLIPEEYIPD
LDIRLGLYRRLSSLVTKVELEGFAAELIDRFGELPKEVNTLMLVVRIKAMCKRAGISRLD
AGPKGATIQFHNDKFANPAGLVDFVKAQPEAKVVGNKITIAAEWATEADRIRGAFAIARD
LAEKVVKPKRQ
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccgtatcattctggggggtgcgcccgaaggtttcgacgcccggcttctggcg
aaggaattggccaagggcgcgccggtcatccatgtcgcccgcgacgacaagcggctggag
gcgatgcgcaccgcgctgtcggtgatggcccccgatgtgccggtgttggaattcccggca
tgggattgtttgccctatgaccgcatctccccgaacccgctgatcgcggcgcggcgcatg
gccacgcttgcggcgctggcgcaggggcgtccgggggccttcgtgctgctgacgacgctg
aacgccgcaacgcagaaggtgccgtcgcgggcgacggtggccggggccagcttctcggcg
caggtcggcgaccgcatcgatgaaaagcgtctgcgcgattaccttggccgcatgggttat
tcccccgtcaccacggtggccgagcccggcgatttcgcgatccgcggcggcatcatcgac
atctatccgcccgaaagcgatccggtccgccttgatctcttcggcgacacattggacggc
ctgcgccagttcgacgccgagagccagcgttcgacgcaaaagcttcagacgctcgatctg
gcgcccgtgtcggaggtgatgctggacgaaggcgcgatcacccgcttccgccagaactac
cgggtggagttcggggcgggcggcgcgaacgacccgctctatgaggcggtcagtgccggg
cgcaagcatcaggggatggagcattggctccccttcttccatgatcggctggagacggtg
ttcgactatatgccggacgcggcggtgatgctcgacgatcaggtgacgcccgcgcgcctc
tcgcggtgggaagggatcgccgatcaatacgacgcgcggcgcgaagccatgggccagaag
aaccgcgtcgataccgtctataagccggtcgcgcccgacgcgctctatctcgacgatgcc
gcatgggccgcaagcttggccccgcaccgcacggtgcagctgtcgcccttggcgcaggcg
ccgggaccgggcgttctggatgccggcgggcggctcggccgcaatttctcgcccgagcgt
cagcaggaaaacgtcagcattttcgaggcgttggccgcacatattcgcacgttgcgcaaa
gatgcgcaggtggtcgtcgccagttggtccgaaggcgcgcgcgaacgcctgaagggcctt
ctggaggatcaggatctgagcgcggccagcgtcgccgatttccgtcaggtcaaggacggc
aagggcggtctgttcctgatcgtctggccgctggaaagcgggttcatcgcgccggggctt
gccgtcatctccgaacaggacgttctgggcgaccggctggtcggaaagccgcgcaagaag
cgtaaatccgacaacttcctgcgcgaggtggataccctgtcccccggcgatctggtcgtg
catgtggaacatggcgtgggccgctatatggggctggagacgctgcgcgtgccccagccg
ccgcgcaaccggcccggtccgccgcatgattacctgaacctcgtctatgccgacgatgcg
aagctctacctgccggtggagaatatcgaactcctaagccgctatggccatgaggagggt
cttctcgacaagctgggcggtggcgcgtggcaggccaagaaggcccgcctgaaggaacgc
atccgcgagatcgccgaccgtctgatgcgcatcgccgccgagcggcatctgcgccacgcc
ccgatcctcgaagcgccgcatcagatgtgggaggcgttcgccgcccgctttccgtatcag
gaaaccgacgaccagctttcggccattgccgatgtcgtcggcgatctggaagcgggccgc
ccgatggaccggctggtcgtcggcgatgtcggcttcggcaagaccgaggtggcgatgcgc
gccgccttcgtggccgcgatggccgggatgcaggtcgccgtcatctgcccgacgacgctg
ctggcgcgccagcatttccgcagctttgccgaacgcttccgcggcttcccgttcaaggtg
cgtcaactgtcgcgcttcgtgcccgccaaggaggccgccgaaacgcgcgccggtctggcc
gacggcacggtggacatctgcgtcggcacccacgcgcttctggccaaaggggtgaagatc
aagaacctcggcctgctggtcatcgacgaggagcagcatttcggcgtctcccacaaggaa
cgcctgaaggagatgcgctcggagatccatgtcctgacccttacggcgacgcccattccg
cgtacgttgcaactgtcgctgacgggggtgcgcgatctgtcgatcatcgcgacgccgccg
gtcgatcggcttgcgatacgcacctatgtctcggagttcgatacggtcacgatccgcgag
gcgttgctgcgcgagcggtatcgcggcgggcaaagcttcttcgtcgtgccgcgcgtgtcc
gacctgccggagatcgaggcgttcctgcgcgagcaggtgcccgaagtcaccttcaccatc
gccaatggccagatggccgccggcgagttggatgagcgtatgaacgccttctacgacggc
aagttcgatgtgctgctggcgacgaccatcgtggaatccggcctcgatattccgacggcg
aacacgatgatcgtgcaccgggccgatatgttcggcctgtcgcagctctatcagatccgt
gggcgggtgggccgggccaagacgcgggcctattgctatctgacgacgaaaccgcgcgcg
gcgctgacgccgcaggcgcaaaaacgtcttcgcctgctcagcagcctcgacagtctgggg
gcggggttcaacctcgcctcgcacgatctggacctgcgcggcgcgggcaatcttctgggc
gaggagcagtccggccatatcaaggaggtcggctacgagctctatcagaacatgctggag
gagacgatccagaagatccgctcgggcgagatcggcggcctgagcgagatggacgagcaa
tgggcgccgcagatcaatatcggcgtgccggtcctgatcccggaggagtatatccccgat
cttgacatccgccttggcctctaccgccgtttgtccagccttgtaacgaaggtggagcta
gaagggttcgccgccgaattgatcgaccgtttcggcgaattgccaaaggaggtgaacacc
ctgatgcttgtggtgcggatcaaggcgatgtgcaagcgggccgggatttcgcggctggat
gccgggccgaagggcgcgacgatccagttccacaacgacaaattcgccaatccggccgga
cttgtggatttcgtgaaggcgcaacccgaggcgaaggtcgtcggcaataagatcacgatc
gccgccgaatgggcgaccgaggccgaccgcatccgtggcgccttcgccatcgcacgcgat
ctggccgagaaggtggtgaaaccgaagcgtcagtga
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