Flagellimonas aurea: ABWH94_18875
Help
Entry
ABWH94_18875 CDS
T11242
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
faw Flagellimonas aurea
Pathway
faw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
faw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABWH94_18875 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
faw03021
]
ABWH94_18875 (rpoB)
03400 DNA repair and recombination proteins [BR:
faw03400
]
ABWH94_18875 (rpoB)
Enzymes [BR:
faw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABWH94_18875 (rpoB)
Transcription machinery [BR:
faw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABWH94_18875 (rpoB)
DNA repair and recombination proteins [BR:
faw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABWH94_18875 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
RnfC_N
efThoc1
AGA2
Motif
Other DBs
NCBI-ProteinID:
XHC22147
LinkDB
All DBs
Position
complement(4221381..4225190)
Genome browser
AA seq
1269 aa
AA seq
DB search
MFTNTIERVNFASAKNIPEYPDFLDIQIKSFQDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNQFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEVKVSKSGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTVLEKEHIDEIIDADVKTILLHKENNA
QSDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAK
VNNMGFLETPYRKVENGKVDTKNHIYLSAEEEEGMKIAQANIPLADDGTIEREKVIAREE
GDFPVVDPTEVKYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPDSPI
VGTGLERQVATDSRVLINAEGDGVVEYVDAQKITIKYDRTDEERLVSFDDDSKTYQLVKF
RKTNQGTSINLKPIVRKGDKVKKGQVLCEGYATEKGELALGRNMKVAFMPWKGYNFEDAI
VISEKVVREDIFTSIHVDEYSLEVRDTKLGAEELTNDIPNVSEEATKDLDEYGMIRIGAE
VKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR
SIKDKRKRSEDKEAISRLELDYEVKFQQLKDELIEKLFGLISGKTSQGVINDLGEEVLPK
GKKYTIKMLNAVDDFAHLVGGSWTTDDDTNALVADLLHNYKIKLNDIQGNLRRDKFTISV
GDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGLKLGQKYATPIFDGASLDEINKITDEAGIPRFGHTYL
YDGGTGQRFDQRATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASSTLREILTVKSDDVIGRAKTYETIVKGETMPEPGLPESFNVLMHELKG
LGLDIRLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgttcacaaacactattgaaagagttaatttcgcatccgctaagaacataccggaatac
ccggatttcttggacattcagataaaatcgttccaagactttttccagcttgaaactaaa
tctgacgaaagaggaaacgaaggtctctacaacaccttcatggagaattttccaatcacc
gataccagaaaccagttcgtacttgagtttttggattacttcattgatccaccacgatat
tccatccaagaatgtatagagcgtggacttacctatagcgtaccgttaaaggcgcgtcta
aaattgtactgtaccgatccagagcacgaagattttgaaaccattgtacaggacgtgtat
ttggggaccatcccttacatgactccaagtggtactttcgtgatcaacggagcggaacgt
gttgtagtatcccagttgcacagatctccaggagttttctttggacaatctttccacgca
aacgggacaaaattgtattcggccagggtaatcccgttcaaaggatcttggatcgagttc
gccaccgatatcaattcggtgatgtatgcctacatcgataggaagaaaaaattaccggta
accactttgttccgtgccatcgggtttgaaagggacaaggatattttggaaatcttcgac
ctttcggaagaagtaaaggtttccaaatccggacttaaaaaagtattgggccgtaaattg
gccgctagggtgttgaacacatggcatgaggatttcgtggacgaggatacaggtgaagtg
gtttccatcgaaagaaacgaaattgtacttgatcgtgatacagttttggaaaaagagcat
atcgatgagatcattgatgccgatgtgaagaccattttgcttcataaggaaaacaatgca
caatccgattacgccatcatccataacaccttgcaaaaggaccctaccaattctgaaaag
gaagcggtagaacatatctatagacaattacgtaatgccgagccgccagatgaagagacc
gctcgtggtattatcgataaattgttcttctccgaccaacgttacaacttaggtgaggta
ggtcgttaccgaatgaacaaaaaactgggattggatatcggaatggacaaacaagttttg
accaaagaagatatcatcaccattattaaatatttgatcgagttgatcaactccaaagcg
gagattgatgatatcgatcacttgtccaaccgtcgtgttagaaccgttggggagcaattg
tcccagcagtttggcgtaggtttggcacgtatggcacgtaccatccgtgagcgtatgaac
gttcgtgacaacgaagtgtttacaccgatagatttgatcaacgcaaagacattgtcctca
gtgatcaattctttcttcggaaccaaccagttgtcccagttcatggaccagacgaacccg
ttggccgagattacacacaaaagaagattgtccgcattggggccaggtggtctttcccgt
gaaagagcaggtttcgaggtgcgtgacgttcactatacacactacggaagattgtgtccc
atcgagacacctgaaggaccgaacattggtttgatctcttcattgtccgtgtttgccaag
gtgaacaatatgggcttcttggaaactccttaccgtaaagtagagaatggtaaagtggat
actaaaaaccacatttacctaagtgcagaggaagaggaaggaatgaagatcgcccaagcc
aatattccattggcagatgacggtaccattgaaagggagaaggtaattgcccgtgaagaa
ggtgatttcccggttgtggacccaacagaggtaaaatataccgacgttgcgcctaaccag
attgcttccatttccgcatcgttgattccgttcttggagcacgatgatgcgaaccgtgcg
ttgatgggatcgaacatgatgcgtcaggcagttccattgttgagaccagactctccgatc
gtaggtacaggtctggaaagacaagtagctaccgattcccgagtattgatcaatgccgaa
ggagatggagttgttgagtatgtggatgcacagaagatcaccattaagtacgatagaacc
gatgaagaaaggttggtaagctttgacgatgactcgaagacctaccaattggtgaagttc
agaaaaacaaaccaagggaccagtatcaacttgaaaccaatcgtaagaaaaggggacaag
gtgaaaaaaggtcaggtactttgtgaaggttatgctaccgaaaaaggtgaattggccttg
ggtagaaacatgaaggtggcctttatgccttggaaaggatacaactttgaggatgcgatc
gtaatctccgaaaaagtggtgcgcgaggatatctttacctctatccatgtggatgagtac
tctcttgaagtaagggacaccaaattgggtgcagaggaattgacaaacgatattcccaac
gtatccgaagaggcaacaaaggatttggacgaatacggtatgatccgtatcggtgccgaa
gtgaagcccggtgatatcttgatcggtaagatcactccaaaaggagaatcggacccaact
ccagaagaaaaattgttgcgtgccatctttggtgacaaagcgggtgacgttaaggatgct
tcattgaaagcttcaccatcattgagaggtgttgttatcgataagaaattgttctcccgt
tccatcaaggacaagagaaaacgttcagaagataaagaggccatttcaagattggagttg
gactacgaagtgaagttccaacaacttaaagatgaattgatcgagaagttgtttggattg
atcagtggaaaaacatctcaaggtgtaatcaatgatttgggtgaagaagtacttccaaaa
ggaaagaaatacaccatcaaaatgttgaacgctgttgacgatttcgctcacttggtagga
ggtagctggacaacggatgacgataccaatgctttggtagccgatttgttgcacaactac
aaaatcaaattgaacgatattcaaggtaaccttagaagggacaagttcaccatctctgtt
ggagatgaacttcctgcaggtatcatgaagctggccaaagtttatatcgccaaaaaacgt
aagttgaaagtaggtgataaaatggcaggtcgtcacggtaacaaaggtatcgtggcccgt
atcgttcgtcaagaggacatgccgttcttggaagatggaaccccagtggatatcgtattg
aacccacttggtgtaccttcaaggatgaacattggtcagatttatgaaaccgtattgggt
tgggccggattgaagttgggtcaaaaatatgcgactccaattttcgatggtgcctcattg
gatgaaatcaataagattaccgatgaagcaggtattccaagatttggacacacctaccta
tatgatggaggaacaggtcagcgttttgaccaacgtgcaaccgttggtgtcatctacatg
ttgaaactaggtcacatggtagacgataagatgcacgcaagatctattggaccatactcc
ttgatcacacagcaaccattgggtggtaaagctcagtttggaggtcagcgttttggagag
atggaagtttgggcattggaagcttacggagcgtcatctacccttagggagatattgacc
gttaagtccgatgacgtgatcggaagagccaagacctatgagaccatcgtaaaaggtgag
accatgccagaacctggtttgccagaatctttcaacgtattgatgcacgaacttaaaggt
ttgggcttggatatccgtttggaagagtag
DBGET
integrated database retrieval system
