Aureibaculum algae: FF125_14965
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Entry
FF125_14965 CDS
T06009
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fbe
Aureibaculum algae
Pathway
fbe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fbe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FF125_14965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fbe03021
]
FF125_14965 (rpoB)
03400 DNA repair and recombination proteins [BR:
fbe03400
]
FF125_14965 (rpoB)
Enzymes [BR:
fbe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FF125_14965 (rpoB)
Transcription machinery [BR:
fbe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FF125_14965 (rpoB)
DNA repair and recombination proteins [BR:
fbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FF125_14965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
AGA2
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QCX39683
UniProt:
A0A5B7TWG6
LinkDB
All DBs
Position
complement(3561417..3565232)
Genome browser
AA seq
1271 aa
AA seq
DB search
MATNTSTERVNFSSAKLITDYPDFLDIQVKSFQDFFQLETKADQRSDEGLFKTFSDNFPI
TDTRNQFVLEFIDYFVDPPRYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIVQDV
YLGTIPYMTHSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIE
FATDINQVMYAYIDRKKKLPVTTLFRAIGYERDKDILEIFDLADEIKVSKSGLKKVLDRK
LAARVLKTWHEDFVDEDTGEVVSIERNEIILDRDTVLEKEHIDEILDAGTKTILLHKEDN
EMGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDYETAKGIINKLFFSEQRYNLGE
VGRYRMNKKLGLDIDIEERVLTKIDIITIIKNLIKLVNSKAEVDDIDHLSNRRVRTVGEQ
LASQFGVGLSRMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYA
KVNNLGFIETPYREVVEGKIDITKTPIYLSAEEEEGKKIAQSNLDLDDEGRIELEKVVAR
EEGDFPLVTPEEVNYMDVSPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLMRPES
PIVGTGLERRVATDSRILINAEGNGVVEYVDSDKVTIRYDRTEEERLVSFTEDSKTYNLI
KFRKTNQGTSINLHPIVTKGDKVAKGQVLCEGYATEKGELALGRNMKVAFMPWKGYNFED
AIVISERVVREDIFTSIHIDEYSLDVRDTKLGAEELTNDIPNVSEEATKDLDENGMIRIG
AEIKPGDILIGKITPKGESDPTPEEKLLRAIFGDNAGDVKDASLKASPSLNGVVIDKKLF
QRTIKDKAKRSQDKEDIAKLEAEFTLKFDDIRERLIDKLFSLVNGKTAQGVLNDLGEEVF
PKGKKYTLKMLNAISNFEYLTKGTWTTDDHLNKLITELIHNYKITVNDIQGSLRREKFTI
TVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRAEDMPFLEDGTPVDI
VLNPLGVPSRMNIGQIYETVLGWAGQKLNQKYATPIFDGASIDQITELTNKAGVPEFGHT
YLYDGGTGERFDQPATVGVIYMIKLGHMIEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAYGASATLREILTVKSDDVLGRAKTYESIVKGEPMPEPGLPESFNVLMHEL
KGLGLDVRLEE
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacaaatacaagtaccgaaagagtaaacttctcatctgcaaaactaattactgat
tatcctgactttttagatattcaagtaaaatcgtttcaagatttttttcagttagaaact
aaggcagaccaaagaagtgacgaaggtttatttaaaactttctcagataatttccctata
actgataccagaaatcaatttgtattagagtttatagattattttgttgatccgccaaga
tactcaattcaagaatgtatcgaaaggggtttaacgcatagtgttccattaaaggcaaga
cttaaattgtattgtactgatccggaacatgaggatttcgaaactattgtacaagatgta
tatttaggtacaattccttacatgacacatagtggtacttttgttataaatggtgcagaa
cgtgttgtggtttctcaattacaccgttctccaggggttttcttcggtcaatcttttcat
gctaatggtactaaattatattctgctagggtaattccttttaaaggttcttggatagaa
tttgcaacagatatcaatcaggtaatgtatgcctatattgatagaaagaaaaaattacct
gttactacattattccgtgctatcggatatgaacgtgataaggatatattagaaatattt
gatcttgctgatgaaattaaagtttcaaaaagtggattgaaaaaagttttagacagaaag
ttagctgcgagagtattgaaaacttggcacgaagatttcgttgatgaagataccggtgaa
gttgtatctattgagcgtaatgagattattttagatagagatactgttcttgaaaaagag
catattgatgaaatacttgatgctggaactaaaacgattcttttacataaagaagacaat
gaaatgggtgattatgctataatccataacaccttacaaaaagatcctacaaactctgaa
aaggaagctgtagaacatatataccgtcaattacgtaatgctgagccgccagattatgag
acagcaaaaggtattataaataaattattcttttctgaacaacgttacaatttaggtgaa
gttggtcgatatagaatgaataaaaaattaggtttagacattgatattgaagaacgtgtc
ttaactaaaatagatattattactattatcaagaatttaatcaaattggttaattctaaa
gcggaagttgatgatattgatcacttatctaaccgtcgtgtaagaactgttggagagcag
ttagcaagtcagtttggtgttggtctttctcgtatggctcgtaccattagagaacgtatg
aatgtgcgtgataatgaggtgtttacacctattgatttgattaatgcgaaaacattatca
tctgtaattaattcgttttttggaacgaatcaattatctcaatttatggatcaaacgaat
ccattggctgagattactcataaaagaagattatcagcattaggacctggaggtttatct
agagaaagagctggttttgaggtgcgtgatgttcactatactcattatggtcgtctatgt
ccaattgaaactcctgaggggccgaatattggattgatttcttcactagctgtatatgca
aaagtgaataatttagggtttattgaaactccatatcgtgaagtagttgaaggtaaaatt
gatattactaaaacgcctatttatttaagtgcagaagaagaggaaggtaaaaaaattgcc
caatctaatttagatttagatgatgaaggtagaatagaattagaaaaagttgtagcaagg
gaagaaggtgattttcctttagtaactccagaagaagttaactatatggatgtttctcct
aatcaaatttcttcgatatcagcttctttgattccgttcttagaacatgatgatgccaac
cgtgcattaatgggatctaacatgatgcgtcaagcagttccattgatgagacctgagtct
ccaattgtaggtacaggtttagagcgtagagtagcaaccgattcaagaattcttatcaat
gccgaaggtaatggtgttgtagaatatgtagattctgataaagttactattagatatgac
agaacagaagaagagagattagtaagttttactgaagatagtaaaacctataatcttatt
aaatttagaaaaacaaatcaaggtacctctataaacttacatcctattgtaaccaaagga
gataaagttgctaaaggtcaagtactttgtgaaggttatgcaaccgaaaaaggtgaatta
gctttaggtagaaatatgaaagtagcctttatgccttggaaagggtataactttgaggat
gcaatcgtaatttctgaaagagttgtacgtgaagatattttcacttctatacatattgat
gaatattctcttgatgttagagatactaaattaggtgctgaagaattaacaaatgatatt
ccaaatgttagtgaagaagctactaaagatttagatgaaaatggaatgataagaattggt
gccgaaattaaaccaggcgatattcttattggtaaaattactccaaaaggagaatctgat
ccaactccagaggaaaaattattacgtgctatatttggtgataatgcaggtgatgttaaa
gatgcttctttaaaagcttctccatcattgaacggtgttgttatcgataaaaaattattc
caaagaacaattaaggataaagcaaaaagaagccaagacaaagaagatattgcaaaatta
gaggctgaatttactcttaagtttgatgatattagagaacgtttaattgataaacttttt
agtcttgttaatggtaaaacagctcaaggtgtattaaatgatttaggtgaagaagttttt
cctaaaggaaaaaaatatacgttgaaaatgttaaatgcaattagcaatttcgagtactta
actaaaggtacttggacaactgatgatcatttaaataaattgattactgaattaattcac
aactataaaattactgtgaatgatattcaagggtcattacgtagagagaaatttacaatt
accgttggtgatgagttaccagcaggtattgtaaaacttgctaaagtttatattgcgaaa
aaacgtaaacttaaagtgggagataaaatggcgggtcgtcacggtaacaaaggtattgta
gctcgtattgtacgtgctgaagatatgcctttcttagaagatggaactcctgttgatatc
gttttaaatccattaggtgtaccttctcgtatgaacattggacaaatttatgaaacagtg
ttaggttgggctggtcagaaattaaatcaaaagtatgcaacaccaatttttgatggtgct
agtattgatcaaattactgaattaaccaacaaagcaggtgtaccagaatttggacatacg
tacttatatgatggtggtacaggtgaacgttttgatcaaccagcaacagtaggtgtaatt
tatatgattaaattaggtcatatgattgaagataaaatgcatgcacgttctattggacca
tattcattaattacacaacaaccattaggtggtaaagcacaatttggtggtcaacgtttt
ggtgagatggaagtttgggcattagaagcttatggagcatctgctacattaagagaaatc
ttaactgtaaaatcggatgatgtattaggtagagccaaaacttacgaatctatcgtaaaa
ggagaaccaatgccagaacctggtttaccagagtcgtttaatgtattaatgcacgagtta
aaaggacttggcttagacgttagattagaggaataa
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