Faecalibacter bovis: J9309_06825
Help
Entry
J9309_06825 CDS
T07705
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fbo
Faecalibacter bovis
Pathway
fbo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fbo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J9309_06825 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fbo03021
]
J9309_06825 (rpoB)
03400 DNA repair and recombination proteins [BR:
fbo03400
]
J9309_06825 (rpoB)
Enzymes [BR:
fbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J9309_06825 (rpoB)
Transcription machinery [BR:
fbo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J9309_06825 (rpoB)
DNA repair and recombination proteins [BR:
fbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J9309_06825 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QTV07005
UniProt:
A0ABX7XGM9
LinkDB
All DBs
Position
1416157..1419999
Genome browser
AA seq
1280 aa
AA seq
DB search
MATKATTNNSTEKKQRLSFSSAKAVAQFPDFLDIQIKSFEDFFQLETRPDQRGNEGLYRT
FAENFPITDTRNQFVLEFLDYFVDPPRYTIDECIERGLTYSVPLKARLKLYCTDDEHEDF
ETVVQDVYLGTIPYMSPSGSFIINGAERVIVSQLHRSPGVFFGQSFHANGTKLYSSRIIP
FKGSWIEFATDINSVMYAYIDRKKKLPLTTLLRAIGYERDKDILEIFDLAEEVKVNKANL
KKAIGRKLAARVLNTWHEDFVDEDTGEVVSIERNEIILDRETIIEKDHIDQIVDSGVKTI
LLHKEDINSADYSIIHNTLQKDPTNTEKEAVEYIYRQLRNAEPPDEETARGIIEKLFFSD
QRYSLGEVGRYRLNKKLGLNISEEIQVLTKEDIISIIKYLIELINSKAEVDDIDHLSNRR
VRTVGEQMASQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLS
QFMDQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLI
SSLCVFAKVNNLGFIETPYHKVENGVVDLESEPIYLSAEEEEEKVIAQANVDIADNGQIL
TERVTAREDSDYPVVEPSEVDLMDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAV
PLLQPQAPIVGTGLEKQVAKDSRILNNAEREGIVTYVDANKIVVKYDRSEDEELVSFDVA
EKTYHLTKFRKTNQGTTITLKPIVKVGDRVEKGQVLSEGYATENGELAIGRNMVVAFMPW
QGYNFEDAIVISEKAVREDWFTSIHIDEYSLDVRDTKLGMEELTSDIPNVSEEATKDLDE
NGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGV
VIDKKLFSRSIKDKRKRSQDKAIIDSIEAEYDVKFNELKEILLEKLYVLLNGKTSQGVYN
DLNEEVIKKGVKYTQKILSSVDEFLNLSGAETMWTTDEDKNELVKELLHNYKIKYNDLQG
ALNRERFTISVGDELPAGIVKLAKIYIAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPF
LEDGTPVNIVLNPLGVPSRMNIGQIYETVLGWAGMKLGRKFATPIFDGATAEQIDELTEE
AGLPRFGTTYLYDGNTGERFAQKATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGG
KAQFGGQRFGEMEVWALEAFGAANILREILTVKSDDVIGRAKTYEAIVKGEPMPEPGIPE
SFNVLLHELQGLGLDINLEE
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
ttggccactaaagcaacaacaaacaactcgactgagaaaaagcaaagattgagtttttca
tctgcaaaagcagtagctcagttccctgatttccttgacatacagattaaatctttcgaa
gattttttccagttggaaacaagacctgaccaacgtggaaacgagggtctttatagaaca
tttgctgagaatttcccaattacggatactcgcaatcagtttgttttagaatttttggac
tacttcgtagatccacctcgttacactattgatgagtgtattgaaagaggattaacttac
agcgtgccgttaaaagctcgtctaaaactttactgtacagatgatgagcacgaagatttc
gaaactgtagtacaagacgtatacttaggaactattccttacatgtctccttcaggatcg
tttatcatcaacggtgcagaacgtgtaatcgtttcgcaattacaccgttctccaggtgtt
ttcttcggtcaatcttttcatgctaatggtacgaagttatattcttctcgtatcatccca
ttcaaaggatcatggattgaatttgctacagacatcaacagcgtaatgtatgcatacatc
gatcgtaagaaaaaattacctcttacgacgttattacgtgcaatcggttacgaaagagat
aaagacatcttagagattttcgacttagctgaagaagttaaagttaataaagcaaactta
aagaaagcgattggacgtaagttagctgctcgtgtattaaacacatggcatgaagatttc
gtagatgaagatactggtgaagtagtatctattgagcgtaatgagattattttagatcgt
gaaactatcatcgaaaaagatcacattgatcaaatcgttgattcaggggttaaaacaatc
ttattacacaaagaggatattaattctgctgattacagcattatccacaatactttacaa
aaagaccctactaatactgaaaaagaggcagtagagtatatctatagacaattacgtaac
gctgagccaccagatgaggagacagcacgtggaatcattgaaaaattattcttctctgat
caacgttactcattaggtgaagtaggtcgttaccgattaaataaaaaattaggtttaaat
atttcggaagaaattcaagtattaacgaaagaggatattatctctatcattaaatatttg
attgaattaatcaactctaaagcagaggttgatgatatcgaccacttatcaaaccgtcgt
gttcgtacagttggtgagcaaatggcttctcaatttggtgtaggtttagctcgtatggct
agaactatccgcgaaagaatgaatgttcgtgacaatgaagtgtttacgccaattgacttg
atcaatgcgaaaacattatcatctgttattaactctttctttggtacgaatcagttatct
cagttcatggaccaaacaaatccattatcagagattactcacaaacgtcgtttatcggca
ttaggaccaggaggtttatctcgtgagagagctggattcgaggtacgtgacgttcaccat
acacactatggtcgtttatgtccaatcgaaactccagagggaccaaacattggtttaatt
tcatctttatgtgtatttgctaaagtaaataacttaggtttcattgaaactccttaccac
aaagtagaaaatggtgttgttgatttagaatcagaaccaatctatttatctgctgaagag
gaagaagaaaaagtaattgctcaagcaaacgttgatatcgctgataacggacaaatctta
actgaacgtgttactgctcgtgaagacagtgattacccagttgtagagccatcagaagta
gatttaatggacgttgctccaaaccagatcgcttctatttctgcatctttaattccattc
ttagagcacgatgatgccaaccgtgcgttaatgggatctaacatgatgcgtcaggctgtt
ccattattacaacctcaagcgcctattgttggtacaggtttagagaaacaagtagctaaa
gattctcgtatcttaaacaatgctgaacgtgaaggaattgtaacttacgttgatgcaaac
aaaattgttgtaaaatacgatcgttctgaagacgaagagttagttagttttgacgttgca
gaaaaaacttaccatttaactaaattccgtaaaacgaatcaaggtactactatcacatta
aaaccaattgtaaaagttggagatagagtagaaaaaggtcaagtattatctgaaggttat
gctactgaaaatggagaattagcaattggtcgtaacatggttgttgccttcatgccttgg
caagggtacaacttcgaggatgccattgtaatctctgaaaaagctgttcgtgaggactgg
tttacttctatccacatcgatgaatattcattagatgtacgtgatactaaattaggtatg
gaagaattaacttctgatattcctaacgtttctgaagaggctactaaagacttagacgaa
aacggtatgatccgtatcggtgctgaagttaaacctggtgatatcttaattggtaagatt
actccaaaaggtgaatcagatccaactccagaagaaaaattattacgtgcgatctttggt
gacaaagcaggtgatgtaaaagacgcttcattaaaagcatctccatcattacgtggtgtt
gttatcgataagaaattattctctcgtagtattaaagataagcgtaaacgctctcaagat
aaagcaattattgatagcatcgaagctgaatacgatgttaaattcaatgaattaaaagag
attttactagaaaaactttacgttttattaaacggtaaaacatctcaaggtgtatacaac
gacttgaatgaagaagttatcaagaaaggagttaaatacactcaaaaaatcttatctagt
gttgatgaattcttaaacttatcaggtgctgaaactatgtggacgactgatgaagataag
aatgaattagtaaaagagttattacacaactataaaattaaatacaacgacttacaaggt
gcattaaaccgtgagcgtttcacaatttcagttggtgatgagttaccagcaggaattgtt
aagttagcgaaaatttacatcgctaagaaacgtaaattaaaagtaggggataaaatggcc
ggacgtcacggtaacaaaggtattgttgctcgtatcgttcgtgatgaagatatgcctttc
ttagaagacggaacaccagtaaacattgtacttaacccattaggggtaccttctcgtatg
aatatcggtcagatttatgaaacggtattaggatgggctggtatgaaattaggtcgtaag
ttcgctacacctatcttcgatggtgcaactgcagaacaaatcgatgaattaactgaagaa
gctggattaccacgttttggtacaacgtacttatacgacggtaatacaggtgagcgattc
gctcagaaagcaacagttggtgtaatttatatgctgaaattaggacacatggtagatgat
aaaatgcacgcgcgttctatcggaccatactctttaattactcagcaaccattaggaggt
aaagcacaattcggaggtcaacgtttcggagagatggaggtttgggcattagaagcattc
ggtgctgctaatatcttacgtgaaatcttaacggtaaaatcggatgatgttatcggacgt
gctaaaacttacgaagcaatcgtaaaaggagaaccaatgccagaacctggtattccagaa
tcatttaacgtattgttacatgagttacaaggtcttggattagacataaacttggaagaa
taa
DBGET
integrated database retrieval system
