Francisella cf. novicida Fx1: FNFX1_0687
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Entry
FNFX1_0687 CDS
T01937
Name
(GenBank) Excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
fcf
Francisella cf. novicida Fx1
Pathway
fcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FNFX1_0687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcf03400
]
FNFX1_0687
DNA repair and recombination proteins [BR:
fcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FNFX1_0687
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GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH_2
HHH
DUF4709
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEB27635
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Position
700102..701940
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AA seq
612 aa
AA seq
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MIVDNSKDFDLKSFLANLTTHSGVYRMLDKHGEIIYVGKAKNLKNRVNSYFSKGAKDSKT
LMMVEQIARIEITITPSDYEAYLLENNLIKQHRPKYNILFKDDKSYPYLVISRDKFPRVS
FYRGKSAYKKGQCFGPYVSISSVKNTLNTIQKIFPIRQCENSYYKSRVRPCLQYQIKRCL
APCVGLVSQQQYDEQLAILKKFLAGKFSTVLEEISAKMYQASEDMEYEKAQVYRDQLVVL
RKLQQQQIVDIQEDKTFDVIGIYMQDSYASIALLQIQNGDVVADRHWSIDAKGQDKTSIM
HAFLSHFYLGDEIRNIWPKNIILSKVEFADITDLMNSISQKIGQAINWIIAPAADNLKWL
KLAEVNARQKLNIYTSSKSQYQKRLESLKEFLELEKDIKRIECFDISHFQGEATIASCVL
YTDEGEDRKSHRRYNIKDIKAGDDYAAIYQAVSRRVSSGLEADNLPDVMIIDGGKGQIHQ
AEAVFREYGIQDKVELVSLGKGIERISGKEKIYKGFDDTEYTLDEHNPGFLLLRQVRDSA
HDHAIKGQRKKVSANRQSSIIEEIEGVGPKRRKALIMYFGGWQELSRASVDEIAKVKGIS
KKLAQEIWECFH
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgattgtagataattctaaagattttgatttaaaaagtttcttggcgaacttgactaca
cattctggtgtttatcgtatgcttgataaacatggggagataatttatgttggtaaagca
aaaaaccttaaaaaccgtgtaaacagttatttttcaaaaggtgctaaagatagtaaaact
ttaatgatggtagagcagatagctcgaattgagataactattacccctagtgactatgaa
gcatatttattagaaaataatctcatcaagcaacatcgccctaaatacaatattttattt
aaagatgataagagctacccatatctggtaatttcgcgtgataaattccctagagtatct
ttttatcgtggcaaatcagcatataaaaaaggtcagtgttttggaccttatgtgtcgata
tcatcagttaagaatactctaaatactattcaaaaaatttttccaatccgacaatgtgaa
aactcatactataaatctagagttagaccatgtttacaatatcaaattaaacgctgtcta
gcaccatgtgtaggtttggtttctcaacagcaatatgatgaacaattagcaattctaaaa
aaattcttagcaggtaaattcagtactgttttagaagaaatatcagcgaagatgtatcag
gcatctgaagatatggagtatgagaaagctcaagtttatcgtgatcaattggtggtgttg
cgtaaattacaacagcaacaaatagttgatattcaagaggataaaacgtttgatgtaatt
ggtatatatatgcaagatagctatgcaagtatagcattgctacaaatccaaaatggtgat
gttgttgccgatagacactggagtatagatgccaaagggcaagataaaacctcaattatg
catgcttttttatcacatttttatttaggagatgagattcgtaatatttggcctaaaaat
ataatcctatcaaaagttgagtttgctgatattaccgatcttatgaatagtatttcacaa
aaaattggtcaagcgataaattggataattgctccagcagctgataatctcaagtggctc
aagttagcagaagtaaatgcacgacaaaagttaaatatctacacaagctcaaaatctcag
taccaaaaacgcttagaatcactcaaagagtttcttgagttagaaaaagatattaagcgt
atcgagtgttttgatatttcacactttcaaggtgaggcaaccattgcatcatgtgttcta
tatacagatgaaggtgaggatcgcaaatctcatcgcagatacaatatcaaagatatcaaa
gcaggagatgactatgcagcaatttatcaggcagtatcgcgtcgagtcagttcagggtta
gaggctgacaacctcccagatgtaatgataatagatggtggtaagggacagattcaccaa
gcagaagcagtttttagagagtatggaattcaagataaagtcgaacttgtaagtttgggt
aaaggtattgagcgtataagtggtaaagaaaaaatctacaaaggttttgatgataccgaa
tatacattagatgaacacaatccagggtttttattattacgacaagttagggactctgct
catgatcatgcgattaaagggcagcgtaaaaaagtaagtgcaaatagacagtcatcaatt
attgaagaaatagaaggagttggaccgaagcgtcgcaaggctttgataatgtattttggt
ggctggcaagagttatctagagcatctgttgatgagattgcaaaggtcaaaggaattagt
aaaaagctcgcccaagagatttgggagtgctttcattaa
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