Flavobacterium commune: BIW12_11000
Help
Entry
BIW12_11000 CDS
T05006
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fcm
Flavobacterium commune
Pathway
fcm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fcm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BIW12_11000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fcm03021
]
BIW12_11000
03400 DNA repair and recombination proteins [BR:
fcm03400
]
BIW12_11000
Enzymes [BR:
fcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BIW12_11000
Transcription machinery [BR:
fcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BIW12_11000
DNA repair and recombination proteins [BR:
fcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BIW12_11000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
efThoc1
AGA2
KOW2_Spt5
Motif
Other DBs
NCBI-ProteinID:
APA00977
UniProt:
A0A1D9PEF8
LinkDB
All DBs
Position
2616399..2620211
Genome browser
AA seq
1270 aa
AA seq
DB search
MITNQTERLNFASTKNIPQYPDFLDVQVKSFQDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNNFVLEFLDYFVDPPRYTIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
STDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGLKKYIGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTIIDKDNVEEIIDSNVKSILLHKEDAN
QADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLSLDIPMDKQVLTKEDIITIVKYLIELINAKADIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAK
VNGMGFIETPYRKVTNGVVDLVSEPTYLSAEEEEGMLIAQANIEMEDSGKITAENVIARE
EGDFPVIDPSKVHYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLIRPEAP
IVGTGLERQVASDSRVLINAEGHGTVEYVDANIITIKYDRSEEERMVSFDADEKTYNLIK
FRKTNQGTSINLKPIVRKGDRVVPGQVLSEGYATENGELALGRNLKVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHVDDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFA
RAVKDKRKRTQDKDALGALEMEFEVKFTELKDRLIEKLFLIVNGKTSQGVMNDLGEEVLP
KGKKYTQKMLYAVEDFAHLSKGQWVADDATNKLVNDLIHNYKIKLNDLQGALRREKFTIT
VGDELPSGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLGRKYATPIFDGASLDQINELTDEAGIPRFGHTH
LYDGGTGERFHQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgataacaaatcagactgaaagattgaattttgcctctacaaaaaatatacctcagtat
ccggattttctggatgttcaggttaaatcttttcaagatttttttcaattagaaactaaa
tcagatgaaagaggcaacgaaggtttatacaataccttcatggaaaactttccaattaca
gatacaagaaataactttgtattggaattcctggattattttgttgatccaccacgttat
actattcaagaatgtatagaaagagggcttacacatagtgtgcctttaaaagcaaggtta
aaactttattgtactgacccggagcacgaggattttgaaactattgttcaggatgtttat
cttggtacaattccttacatgactccaagtggaacttttgttattaacggtgctgagcgt
gttgttgtttctcaattacacagatctccaggggttttcttcggacaatcattccacgca
aatggaacaaaactatattctgccagagtaattccttttaaaggttcctggatagaattc
tctactgatatcaacagcgttatgtacgcttatatcgacagaaagaaaaaattacctgta
acaactttattccgtgctatcggtttcgaaagagataaggatatccttgaaatttttgac
ttagctgaagaaattaaagtatctaaaacaggacttaaaaaatatatcggtagaaaatta
gctgcccgtgtattgaatacatggcatgaagatttcgtagatgaagatactggtgaggta
gtttctatcgaacgtaatgagattatccttgatcgtgatacaattatcgataaagataat
gttgaagaaatcattgattctaacgttaaatctattttgttgcataaagaagatgctaat
caggctgattacgctatcattcataatacattacaaaaagatccaacaaactctgaaaaa
gaagctgttgagcatatctacagacaattgcgtaacgcagaaccgcctgatgaagaaact
gctcgtggtattatagataaattgttcttctctgaccaacgttacaacttaggtgaagta
ggtcgttacagaatgaacaagaaattaagtcttgatattcctatggacaaacaagttttg
accaaagaagatatcattactatcgtgaagtatttaattgagttgataaacgctaaggca
gatatcgatgatattgaccacttatcaaaccgtcgtgttagaacagttggagaacaattg
tctcaacaattcggtgttggtttagcacgtatggctagaactattcgtgagagaatgaac
gttagagataacgaggtgtttacaccaattgatttgattaatgctaaaacattatcatca
gttatcaactctttctttggaactaaccagttatctcaatttatggatcaaacgaatcca
ttagctgagattacacacaaaagaagattatctgcacttggaccaggtggactttcgaga
gagagagccggatttgaggttcgtgacgttcactatacgcactacggacgtttatgtcct
attgaaacaccagagggaccaaacattggtttgatttcttctcttggagtttatgctaaa
gtaaacggaatgggattcattgaaactccttaccgtaaagtaactaatggtgtagttgat
ttagtttctgagccaacttacttaagtgctgaagaagaagaaggaatgttgattgcgcaa
gccaacattgaaatggaagattctggaaaaattactgctgaaaacgtaattgcgcgtgaa
gaaggagatttcccggttatcgatccttctaaagtacattatactgacgttgctcctaac
caaatcgcttcgatttctgcatctttgattcctttcttggagcatgatgatgcgaaccgt
gcgttgatgggatctaacatgatgcgtcaggccgttccattgatacgtcctgaagctcca
attgtaggtactggtttagagcgtcaagtagcttctgactctagagtattgattaatgct
gaagggcatggtactgtagaatatgtagatgctaatatcattactatcaaatacgatcgt
tctgaggaagaaagaatggtaagttttgatgctgatgaaaagacatataacttaattaaa
ttcagaaaaaccaaccaaggaactagtattaacttgaaacctatcgtaagaaaaggtgat
agagttgttcccggacaagtattgtcagaaggatatgctactgaaaatggtgaattagct
ttaggtagaaacttaaaagtagcgttcatgccatggaaagggtacaacttcgaggatgcg
attgtaatttctgagaaagttgttcgtgatgatatctttacttcaatccacgtagacgat
tactcattagaggtaagagatactaaattaggtaacgaagaattaacgaatgatattcct
aacgtttctgaagaggctactaaagacttagatgaaaacggtatgattagaattggtgcc
gaggttaaacctggtgatattttaattggaaaaattacaccaaaaggagaatcagatcca
actccggaagagaaattgcttcgtgcaattttcggggacaaagctggtgatgtaaaagat
gcttcattaaaagcttctccatctttacacggtgttgttttagacaaaaaattatttgca
agagcagtaaaagataaacgtaaacgtactcaggacaaagatgctttaggagcacttgaa
atggagtttgaagttaaatttactgaactgaaagatagattaattgaaaaacttttctta
atcgtaaacggaaaaacatcacaaggtgtaatgaacgatttgggtgaagaagttttacca
aaaggtaaaaaatatactcaaaaaatgctttacgcagttgaagattttgctcacttaagc
aaaggtcaatgggtagctgatgatgcaactaataagttagttaatgatttgattcataac
tataaaattaagttgaatgatttacaaggagcgttaagaagagagaaattcacgattact
gttggagatgaattgccatcaggaattttgaaattagctaaggtttatatcgctaagaaa
cgtaagttgaaagtaggggataaaatggcaggacgtcacggtaacaaaggtattgttgca
agaatcgttcgtcacgaagatatgcctttccttgaagacggaacaccagttgatatcgtg
ttgaacccacttggggtaccttcacgtatgaacatcggtcagatttatgagactgttctt
ggatgggctggacaaaaattaggtagaaaatatgctactcctatttttgatggtgcttct
cttgaccaaattaatgaattgactgacgaagctggaattccacgttttggacatacgcat
ctttatgatggtggtacaggagagcgtttccatcaggcagcaactgtgggtgtaatttac
atgttgaaattaggacacatggttgacgataagatgcacgcacgttctatcggaccatac
tcgttgattactcaacagccacttggaggtaaagctcaatttggaggtcagcgttttgga
gagatggaggtttgggcacttgaggcttatggtgcttctagtacacttcgtgaaatcttg
actgttaaatctgatgacgtaattggtagagctaaaacttacgaagctatcgtaaaaggt
gaaactatgccagaaccaggattacctgaatcattcaatgtattaatgcacgaattgaaa
ggtcttggattagatattagattagaagagtaa
DBGET
integrated database retrieval system
