Flavobacterium collinsii: TRV642_2784
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Entry
TRV642_2784 CDS
T08703
Name
(GenBank) Amb_all domain-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
fcs
Flavobacterium collinsii
Pathway
fcs00040
Pentose and glucuronate interconversions
fcs01100
Metabolic pathways
fcs02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
TRV642_2784
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
TRV642_2784
Enzymes [BR:
fcs01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
TRV642_2784
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Motif
Pfam:
Pectate_lyase_4
Pectate_lyase_5
Motif
Other DBs
NCBI-ProteinID:
CAI2767631
UniProt:
A0A9W4X3S1
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All DBs
Position
TRV642:complement(3159105..3160217)
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AA seq
370 aa
AA seq
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MKFKSTISVFLLTLIFGFAACNTEEIATPQSSENATIETSTTTSGNLTAKIGNCAQVPGW
ASQNGGTTGGGSSPEEVVSNYTQLKSAIENSAVKVIKVTGTITVTTRLSLQDQSGKTIYG
ASGAKLVSTNQTKDGSGIINIKRCTNLIIRNLIFEGPGAYDTDGWDNAILDDCQNVWVDH
CEFRDGVDGNFDIKNKSDFVTVSYTKFGYLKAPKAGGPGGSDDHRYSNLIGSSDGATADR
GKLRITFARCWWAPGCKERMPRVRFGKVHLVNNFFNSTVSNKCIAAGFEASLNVESNVFE
GVKTPIDLMSGFTAVTATDNVFTNTTGNQAGSGTAFTPPYSIVKLNKTAVKADISANAGA
TLGGNICGSF
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaaatcaacaatctcagtgtttctattgacattgattttcggttttgcagcc
tgtaataccgaagaaattgctacaccacaaagtagtgaaaatgctactatcgagacctct
acaacaacttccggcaatttgacggcaaaaattggaaactgtgcccaggttccgggatgg
gcttctcaaaatggaggaacaactggtggaggttcctctccggaagaagtagtttcgaat
tatacacagctgaaatcggctatcgaaaacagtgcggtaaaagtgattaaagttaccggt
accattacggttactacaagattatcactacaggatcaaagtggcaaaaccatttacggt
gcaagcggtgccaagctggtttctaccaaccaaacgaaagacggttcgggtatcatcaac
attaaaagatgtacgaatctgattatcagaaatcttatttttgaaggcccgggtgcttat
gacacagatggctgggacaatgcaattttagatgattgtcaaaatgtatgggtagaccat
tgtgaattcagagatggggttgacgggaacttcgacatcaaaaataaatcagattttgtt
acggtttcgtatacaaaattcggttatttaaaagctcctaaagccggaggtcccggaggt
tccgacgatcacaggtattctaatttaattggttccagtgatggtgcaactgccgatcgt
ggaaaattacgaatcactttcgctcgctgctggtgggctccgggctgcaaagaaagaatg
cctagagtgcgttttggaaaagtacatctggtaaacaacttctttaacagtacggtaagt
aataaatgtattgccgcaggttttgaagcgagtctaaatgtagaaagcaacgtttttgaa
ggtgtaaaaactcctatcgatctaatgagcggttttactgctgttacagcaacagacaat
gttttcaccaatacaaccggaaatcaagccggaagtggtactgcttttactccaccctat
tcgatcgtaaaactgaacaaaactgctgttaaagctgatatctctgccaatgcaggagca
actttaggcggcaatatctgcggatcgttttaa
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