Fundicoccus culcitae: NRE15_08830
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Entry
NRE15_08830 CDS
T09401
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fct
Fundicoccus culcitae
Pathway
fct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NRE15_08830 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fct03021
]
NRE15_08830 (rpoB)
03400 DNA repair and recombination proteins [BR:
fct03400
]
NRE15_08830 (rpoB)
Enzymes [BR:
fct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NRE15_08830 (rpoB)
Transcription machinery [BR:
fct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NRE15_08830 (rpoB)
DNA repair and recombination proteins [BR:
fct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NRE15_08830 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UUX33015
UniProt:
A0ABY5P3M1
LinkDB
All DBs
Position
complement(1950573..1954208)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKNLSQHHTVKYGKKAERRSYARIKEVLDLPNLIEVQTDSYQWFLDEGLKEMFDDISSII
DHSENLELHFVDYVLRDSKYTVDEARSHDANYSKPIYVTLRLINKETGEVKEQEVFFGDF
PIMTEMGTFVINGAERVIVSQLVRSPGVYFHDKVDKKGRHSFTSTVIPNRGAWLEFETDA
KGIAYVRIDRTRKIPLTVLVRALGFGSDDEILDIFGESDLLELTIDKDIHKNQNDSRVEE
ALKDVYERLRPGEPKTAESSRNLLMSRFFDPRRYDLANVGRYKVNKKLNILSRIEGLTLA
ETLADPETGEVILAEGTELNSAAIETLRPYMENNLNDFTLNPSPEGVVGEPIELQQIKVY
SPKDPERVVVVIGNGHIEKTKNLTPADIIASINYYLNLEEGIGKTDDIDHLGNRRVRSVG
ELLQNQFRIGLSRMERVVRERMSMQDVSTITPQQLINIRPVVAAIKEFFGSSQLSQFMDQ
TNPLGELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLST
YAKINRYGFIESPFRKVDKKANKVTDVIEYLSADEEDFYVVAQANSLLNDDSTFATDVVM
ARYTSENIEVTTDKVDYMDVSPKQVVAVATASIPFLENDDSNRALMGANMQRQAVPLLNP
KAPIIGTGIEYKAAHDSGAALINKRAGEVVYVDAKRIVVKIEDGTTDEYRLTKFARSNSG
TCYNQRPIVTVGDYVDAEEILADGPSMENGEMALGQNPLVAFMTWNGYNYEDAIIMSERL
VKDDVYTSIHIEEYESESRDTKLGPEEITREIPNVGEDALKYLDHEGIILIGSEVKDGDI
LVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREDGDEL
APGVNKLVRVYIVQKRKINEGDKMAGRHGNKGVVSLIMPEEDMPFMPDGTPIDIMLNPLG
VPSRMNIGQVFELHLGMAARELGIHIATPVFDGANEDDVWETVREAGMEADAKTTLYDGR
TGEPFDRKVSVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGQPIPKPGVPESFRVLVKELQALGLD
LKVLDANDEEIELQDDDDEDDVVNFNALQKFKDEQKLSSEKAAQAEGQATNTTEATVVDG
ESKTENQLSED
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaacttgagtcaacatcataccgttaaatatggtaagaaggcagaacgacgtagt
tatgcacgaattaaagaagtgcttgacttgccaaacttaattgaagttcaaacagattcc
tatcagtggtttttagatgaaggattaaaggaaatgtttgacgatatttcgtcaatcatt
gatcattcggaaaatttagaactgcattttgttgattatgttttaagagattctaagtat
acggtagatgaagcgcgtagtcatgatgcgaactattctaagccgatttatgttaccttg
cgtttaatcaataaagagacgggtgaagtgaaagaacaagaagtcttttttggtgatttt
ccaattatgacagaaatgggtacctttgttattaatggggcagagcgggtaattgtatct
caattagtgcgttcaccaggtgtctatttccatgataaagtagataaaaaagggcgtcat
agttttacttcaacagttattcctaaccgtggcgcatggttagaatttgaaacagatgct
aaagggattgcttatgtacgtattgaccgtacacggaaaattcctctaacggtattagtg
agagcactaggttttggttctgatgatgagattttggatatttttggtgaatccgattta
ttagaattgacgattgataaagatattcacaaaaaccaaaatgattctcgtgtggaagaa
gctttaaaagatgtttatgaacgtttacgtccaggcgagccgaaaacggctgaaagctca
cgtaatttattgatgtcacgtttctttgaccctcgtcgttatgacttggctaatgttggt
cgctataaagtgaataagaagttaaatatcctttcacggatagaaggtttaaccttagct
gaaaccctagctgatcctgaaacaggtgaagttattttagctgaaggaactgaactgaac
tctgcagcgattgaaacattacgcccttatatggaaaataatttaaatgattttacctta
aatccttcacctgaaggggttgtaggtgagccgattgaattacaacaaattaaagtatat
tcacctaaagatcctgaacgagttgtcgttgttattggtaatggacatattgaaaaaact
aaaaatttaacgcctgcggatatcattgcttctattaattactatttgaatttagaagaa
ggtatcggtaagacagacgatattgaccatttaggtaatcgtcgtgttcgttcagtcggt
gagttattacaaaatcaattccgtattggacttagccgtatggaacgggtggttcgtgag
cgtatgtctatgcaggatgtttcgacaatcactccgcaacaattaattaatattcgacct
gtagtggcagccattaaagaattttttggttcatcacaattatctcaattcatggatcaa
accaacccattaggcgagttatcacataaacgtcgtttatctgcattagggcctggtggt
ttgactcgggatcgtgcgggttatgaagttcgtgacgttcactatacgcactatggtcgt
atgtgtccgatagaaacacctgaaggaccaaacattggtctgattaacaacttatcgact
tatgctaaaattaatcgttatggatttattgaatcaccttttagaaaagtggataaaaaa
gcaaataaagtcacagatgttattgagtatctttcagcagatgaagaagacttttatgtt
gtagcccaagcgaactcgctcttgaatgatgattcaacgtttgccactgatgttgttatg
gcgcgttatacgtctgaaaatatcgaggttacgacggataaagttgattatatggacgtt
tcacctaagcaggttgtagctgtagcaacggcatctattcctttcttggaaaacgatgac
tcaaaccgggctttgatgggtgccaacatgcaacgtcaagccgtgcctttgttgaaccct
aaagcaccaataatcgggacaggtattgaatataaggctgcccatgactcaggggctgct
ttaattaacaaacgtgcaggtgaagtggtctatgtagatgctaaacgcattgttgttaaa
atagaagatgggacaacggatgagtatcgcttaaccaagtttgctcgttcgaactctgga
acgtgttataaccaacgtccaattgtgaccgttggtgattatgtagatgctgaagaaatt
ctagccgatggaccatccatggaaaatggggaaatggctttaggtcaaaacccattggta
gcctttatgacttggaatggttataactacgaagatgcgattattatgtctgaacgtttg
gtgaaagatgacgtctatacgtctattcacattgaagaatatgagtctgaatcacgggat
actaaattaggacctgaagaaataacccgtgaaattccgaacgttggggaagacgcgctg
aaatacttagatcatgaaggaattattttgattggttctgaagtgaaagacggcgatatt
ttagttggtaaagtaacacctaaaggcgttacggagttatctgctgaagaacgactatta
catgctatattcggtgaaaaagcccgtgaagttcgtgatacttccttgcgtgtccctcat
ggcggtggtggtattgttcatgatgtgaagatatttacacgtgaagatggtgatgaatta
gcaccaggggttaacaagttagtacgtgtttacatcgttcaaaaacgtaaaatcaatgaa
ggggataaaatggctggacgtcatggtaataaaggggttgtatccttgattatgccagaa
gaagatatgccatttatgcctgatggtacgccaattgatattatgttaaatccgctaggt
gttccttctcggatgaatattggacaagtatttgaattacatttaggtatggctgctcgt
gaattaggcattcatatcgctacacctgtatttgatggtgcgaatgaagatgatgtttgg
gagactgttcgtgaagctggtatggaagccgatgcgaaaacaactttatatgatggacgt
acaggagaaccttttgatcgtaaagtatccgtcggtgttatgtacatgctgaaactagcc
catatggtggatgataaattacatgcccgttctacaggaccatactcattggtgacgcaa
caacctttaggtggtaaagctcaatttggtggacaacgttttggtgagatggaagtttgg
gcattagaagcctatggtgctgcctatactttacaagaaatcttgacttataaatctgat
gacgttgtcggtcgtgtgaaaacctatgaagcaattgttaaaggccaacctattccaaaa
ccaggtgtgccagaatctttccgcgtattagtgaaagagttacaagccttaggtctagac
cttaaagtattggatgctaatgatgaagaaattgaactacaagatgatgatgatgaagat
gatgtagtcaacttcaatgcgcttcagaaatttaaggatgaacaaaaattatcatcggaa
aaagcagcccaagcagagggtcaagctacaaatacgactgaagcaaccgttgtagatggc
gaatctaaaactgagaatcagttatcagaagactag
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