Fragilariopsis cylindrus: FRACYDRAFT_242364
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Entry
FRACYDRAFT_242364 CDS
T04784
Symbol
Spo11a
Name
(GenBank) DNA topoisomerase IV, alpha subunit
KO
K10878
meiotic recombination protein SPO11
Organism
fcy
Fragilariopsis cylindrus
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fcy03036
]
FRACYDRAFT_242364 (Spo11a)
Chromosome and associated proteins [BR:
fcy03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
FRACYDRAFT_242364 (Spo11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TOP6A-Spo11_Toprim
TP6A_N
RNF220
GeBP-like_DBD
RRM_YTH1
Motif
Other DBs
NCBI-ProteinID:
OEU14011
JGI:
242364
UniProt:
A0A1E7F763
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MCLLFFRVSCSDDDENDSANEEERRIARRPCRYNDDDNNNKVYDTRGDYEYSLDHYHEKD
NDSHASSSSTSASSSSSSSSSSTVSSVFLSVESVLEKIEELILQTVIEPLIEEEPGPFLP
EIDVDNPKTHFKRKLSFHHLTQARSLTSILMVASFCHDLLAPSSSSSVMNNEDDNNEEDS
DDDDDVDIEDGNYYYHRRRQNGRRRRRTTTTREVYYFFVTHFRDQRECDKAIWDLVSILN
LPSRQSLGLVASPKGWFCGSIDVYNGHTNELKFNGRELDTHGMAITPSTYDNDYTTYNNS
KPTNNDRDPMDDDDNNGNGNGNDNIRIESDARCILVIEKEGVYTRLSEDKFFLNYLPCIL
VTGKGFPDIATRRWVRRMQKTLKIPVYGLCDCNPYGVSVLDTYRYDKGVKICNVEKRRKK
KSDDEDDPLEIQWIGLRPSQIEHMNLPSDVFQELTNNDKKRLESLLISSKSKSRTTPKNK
NSKSFAERGGWNKEERVRELQAMYKYKVELEALHWKGMDYMCKFVYETILGHEKKHEEES
VRRRRRRYRRQSDFSDSDSNDNNSIDPDSGVDDNENEHGHNDDDNDQNRDEQSTKRIANK
IDCQGPKRLVAAGSAVVASKLTRKMIYERQALRMGVAPIMLLAVTDQTIYLYT
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttgttgttttttcgcgtttcgtgcagtgacgacgacgagaatgacagtgccaac
gaggaagaaagacgtatcgcaaggcgcccttgtcgctacaacgacgatgataataacaat
aaagtgtatgacacccgtggtgattatgaatacagtctcgatcattatcacgaaaaagac
aacgatagtcacgcttcgtcgtcgtcaacatccgcttcttcttcttcctcctcctcttct
tcatctactgtatcgtctgtatttctatctgtcgaatctgttcttgaaaagattgaagaa
ttgatattacaaacagtgatcgaaccattgatagaagaagaaccgggtccattcttacca
gaaatcgatgtcgataatcctaaaacacatttcaaacgtaaactgtcattccatcatttg
acacaggctcgatcattaacatcaattcttatggttgcatcattctgtcatgatttacta
gcaccatcatcatcatcatccgtcatgaataatgaagacgataataatgaagaagattca
gatgatgacgatgatgtagatatagaggatggtaattattattatcatcgtcgtcgtcaa
aacggaagaagacgaagaagaacaacaactacaagagaggtatattatttcttcgttaca
cattttcgtgatcaaagagaatgtgataaggctatatgggatttagtatctatattaaat
ctaccatcgagacaatcattggggttagtcgcatcaccgaaaggatggttttgtggttca
attgatgtttataatggccatacgaacgaattgaagttcaatggacgagaacttgataca
catggtatggcaatcacaccatcgacgtatgataatgattatactacatacaacaacagc
aaacccactaataatgacagagatccaatggatgatgatgataataatggtaatggtaat
ggtaatgataacatccgtatcgaaagtgatgctcgttgtatattggtcatcgaaaaggaa
ggagtttacacacgattgtcggaagataaattctttttaaattacctaccatgtattctg
gtgacgggtaaaggttttcccgatattgcaactcgtcgatgggtccgaaggatgcaaaag
acattgaaaattcctgtgtatggattgtgtgattgtaatccgtatggtgtttcggtctta
gatacgtatcgatacgataagggtgtcaaaatctgcaatgtcgagaagaggaggaagaag
aagtccgatgatgaggatgatccacttgaaatacaatggatcggattacgtccttctcaa
atcgaacatatgaatcttccatccgatgtattccaagaattgacgaacaatgataagaaa
cgattagaatcgttattgatttcatcgaagtcaaagtcaagaacgacacccaagaacaag
aacagcaaatccttcgctgaacggggtggatggaataaagaagagagagtccgcgaactt
caagcaatgtacaagtataaggtagaactcgaagcactacattggaagggtatggattac
atgtgtaaatttgtatacgagacgattttgggacacgaaaaaaagcatgaagaggaatcc
gtacgtcgtcgtcgacgtcggtatcgacgtcagagtgattttagcgacagtgacagtaat
gataacaatagcatcgatccagacagcggcgtcgatgacaatgaaaacgaacacggccac
aatgacgatgacaatgaccaaaatcgtgatgaacaaagtaccaaaagaatcgcgaacaaa
atagattgtcaaggtccaaaacgtttagtggcggctggatctgccgtggtggcttcgaag
ttgacgaggaaaatgatttacgagcgacaagcattaagaatgggtgtggcaccgatcatg
cttttggctgttacagaccaaacaatatatttgtatacttga
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