Fragilariopsis cylindrus: FRACYDRAFT_243901
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Entry
FRACYDRAFT_243901 CDS
T04784
Name
(GenBank) hypothetical protein
KO
K14309
nuclear pore complex protein Nup93
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
FRACYDRAFT_243901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_243901
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
FRACYDRAFT_243901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nic96
Motif
Other DBs
NCBI-ProteinID:
OEU12645
JGI:
243901
UniProt:
A0A1E7F3R6
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MTLIGNGNIQTTATADNGSFGGLASLPSLGGDPLSRPSWKRSLGELAASNIALIGNNNNR
NNNNTNGSGGRHHAAAAMAASNAPPTSAAQMLLGSRTDFGSLISSSKSSTASSSSSGGKF
ENNHQNHVKDNNLDRFSYDTMNGGGIEVVVRRHRDGMLERILKDQREETQRLLDKAVERQ
IEDDWKEERSWWRKELVGDRNLVDATNNNTHNNIGLGGGGGESNFSSSSSSGGRGLLTSD
YGSGDGNNNNTSGSSFATGCDPKIMQNHLDIVKGIQPTDLKQVIADFERLARTSNNNGYH
NAWLLLGCMLPNIQSPIDGAQGALSHFCRQYQRIINNHVKSASLSGQDTSTSINYGGSST
MAETIAAYVKLTSGSNASVWEILYLCLRCGDTNAAKLVLDVTPVGGQESFSEQPIISPII
GQLSQRQGTAYCMFEVGSPMISSQDRFAIFNLYEKTKNLDPNNTHKLGVLALLCGQPLES
FDTVEDYLFGCLWLALMDKENPVHQIEVVGANVRKYGPSHFAADGSGEWGYVLPLIASQQ
FETALSYLAEAGGPNGLMQSVHLGIVFDLAQVKVSDLGDSSSRGSTSKDVVTALLVNYAT
LSEREPSARLLASLEYLSKIKNHDESNYQISNLIYRSPDDQMEALVGVLDAVGNRKNAIL
DEFLPENEVSKILVDAAELLKKQSSDRTTALSSAAKLYMLGYRHTKVVQLLNENISPVDI
SDENKIFWTQQSELFYQSYLSKRTSVVDSIEREGKLNLIDTNRSLIVLRSFFDRYRQRQF
PDAFEVVRSVGLLPLTQEELNEKASKFRDLDPILKEQFPTVLGATVECLCEMFQRLKSES
RGIPPTVEARLKELQFLARYLFLFASLTNMPKTHWNESSTLTLTTISIDTIEEHEKATID
ACIPIIAAIPASTSLTYTTVTTTTTTTTSSSGEEIHDDHHDEHHRHYKCHQASIFWNTFG
RNFCFSSLSLVHS
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttatcggtaacggtaatattcagaccaccgccactgccgacaatggtagcttt
ggtggtttagcttccttacccagcttgggcggtgaccccctatctcgtccatcttggaaa
cgtagtctcggtgagctcgctgctagtaatatcgctctgattggtaataataataataga
aataacaataacaccaatggtagtggtggacggcatcatgcggctgcagctatggctgct
tcaaatgcaccacccacatctgctgctcaaatgttgttgggaagtcgtaccgatttcggt
tctcttattagtagtagtaaaagttcgaccgccagtagtagtagtagtggtggaaaattc
gaaaacaatcaccaaaatcatgtgaaagacaacaaccttgatcgtttttcttacgatacg
atgaatggagggggtattgaagtagtcgtacggcgtcatcgagatggtatgctggaacgg
atcctcaaagatcaacgagaagaaactcagcgtctacttgataaggcagtagaacgacaa
attgaagatgattggaaagaagaacgaagttggtggagaaaagaacttgtgggggatcgt
aatctagttgatgccacaaataataatactcacaataatatcggcctcggtggtggtggt
ggagaatcgaatttttcttcctcgtcgtcatcgggagggcggggattattgaccagtgat
tatggtagtggtgacgggaacaataataacacctccggatcatcattcgctactggatgt
gatccaaaaataatgcaaaatcatctagacatcgttaaggggatacaaccaacggatttg
aaacaggtcattgccgattttgaaaggttggcccgtaccagcaacaacaacggttatcac
aatgcctggttactccttggttgtatgttaccaaacatacaaagtcctatcgacggtgct
cagggcgcgttatctcatttttgtcgacaatatcaaagaatcattaacaatcatgtcaag
tcagcgagtttatctggacaagatacttctacatctataaattacggtggaagtagtaca
atggcggaaacgattgctgcctacgtgaaacttacgtctggaagcaacgctagcgtatgg
gaaatcctttatctttgtcttcgatgtggtgataccaatgcggcgaagttggttctagat
gttacacccgttggtgggcaggaaagcttctccgaacagcccatcatcagtcccatcatt
ggtcaactcagtcaaagacagggtactgcatattgcatgttcgaggttggttcgccgatg
atatcatctcaagatcgattcgctatttttaacttgtacgagaagaccaaaaacttggat
cccaacaacacacacaagctgggagtattagcactcttatgtggacaaccattggaatca
tttgataccgtagaagattacctgttcggttgtttatggctagctttgatggataaggaa
aatcccgttcatcaaatcgaagtcgtcggagctaatgtccgaaaatatggtccatcgcat
ttcgcagcagatggaagcggtgaatggggatacgtacttcctttaattgcttcgcaacaa
tttgaaacagccttgtcgtatcttgctgaagcgggtggacccaacggtttaatgcaatct
gttcacttgggcatagtctttgatttagctcaagtgaaggtttctgatctaggtgattca
tcatctagagggtcaacatcaaaagacgtagtcactgccttactcgttaattatgcaacc
ctgtcggaaagagaaccgtcagcaagattacttgcttcgcttgagtacctatccaagatt
aaaaatcacgatgaatcgaattaccaaatctcaaatttaatttatcgatctccagacgac
caaatggaggctcttgtgggagtcctagacgccgttggtaatcgaaagaatgctattttg
gatgagtttttacctgagaatgaggtttcaaaaattctagtcgatgccgcagaactttta
aagaaacaatcttcggatagaacaacggcactatcgagtgcagcaaagctttacatgctt
ggataccgccacacgaaagtcgttcagctattgaacgaaaatatctctcccgtcgacatt
tcggacgagaacaagatattctggactcaacagtcggaattattctatcaatcttatctt
tccaagaggactagtgtagtggattcaatagaacgggaaggaaagttgaacttaatcgat
acgaaccgaagtttgattgtgctccgatcgtttttcgatagatataggcaaagacaattc
ccagatgcattcgaagtggtaagaagtgtgggtcttttaccattgacacaggaagagttg
aatgagaaggcgagtaagtttagagatttggatcctatcctaaaagaacaatttccgaca
gtgctcggtgcgactgtggagtgtttgtgtgaaatgtttcaacgtctgaagtcggaatcg
cgtggaatccctcctacggttgaagctcgtttgaaagagctccaatttttagctagatac
ctcttcctctttgcaagtcttaccaacatgccaaagactcattggaatgaaagcagcaca
ctcacactcacgacgatatcgatcgataccatcgaggagcacgagaaggcaactattgac
gcttgcattccaataatagctgcaattcctgcttctacttctctcacttatactactgtt
actactactactactactactacttccagtagtggagaagaaattcacgacgatcatcat
gacgaacatcatcgtcattataagtgtcatcaagcaagcatattctggaatacgttcgga
cgtaatttttgtttctcatctttgagtttggtacattcataa
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