Faecalibacterium duncaniae JCM 31915: GXM22_10065
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Entry
GXM22_10065 CDS
T08154
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fdu
Faecalibacterium duncaniae JCM 31915
Pathway
fdu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fdu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GXM22_10065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fdu03021
]
GXM22_10065
03400 DNA repair and recombination proteins [BR:
fdu03400
]
GXM22_10065
Enzymes [BR:
fdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GXM22_10065
Transcription machinery [BR:
fdu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GXM22_10065
DNA repair and recombination proteins [BR:
fdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GXM22_10065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QIA43374
LinkDB
All DBs
Position
complement(2080153..2083974)
Genome browser
AA seq
1273 aa
AA seq
DB search
MMKVKPVKLGKTERMSFSHIDEVISMPNLIEVQKNSYQWFLDEGLKEVFHDIGTIEDYTG
NLALSFVDFRLDKEPKYSIKECKERDVTYAAPLRVTARLLNKETGEVKDQEIFMGDFPLM
TDAGTFVINGAERAIVSQLVRSPGVFYGDAKDKVGNDLYSATMNPNRGAWLEYETDAANV
FYVRIDKNRKLPVTVLCRALGLSSDEEILNFFGEDERILATLEKDTTKNQDEGLLEVYRK
LRPGEPPTVESATNQINMLFFDPRRYDLSRFGRYKMNKKLSLARRITGFVAAENIVAPLT
GEIIVEAKGKITRELAEKADAAGVDTVILSIDGKKVKVITNGCVDAQGFFSFDVKECGIN
ERCSFDEIKKILDTTSDVEEQKEMLRRNHDQLIGRTVTVKDILSSINYLNGLGHGVGTTD
DIDHLGNRRIRSVGELLQNQFRIGFSRMERVIRERMTLQSQDQSVITPQALINIRPVVAA
IKEFFGSSPLSQFMDQNNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCPI
ETPEGPNIGLISYLASYAKINEYGFVEAPYRKVKKTYDENGKLIDQVVTDEVEYMTADVE
DEYVVAQANEPLDETKHFIRPRVSARRRDDILEIDADKVDYMDVSPRMMVSVATACIPFL
ENDDCNRALMGSNMQRQAVPLMVTQQPIVATGMEYKAATDSGTAVLAKNDGIVEKMDADH
VTVRNAQGGVDNYPLVKFARSNAGTCINQRPIVEVGESVKAGQVLADGPAMRNGEISLGK
NALIGFMTWEGYNYEDAVLLNEKIVREDVYTSIHIEEYETESRDTKLGPEEITRDIPNVS
EDALKDLDERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSL
RVPHGEYGIIVDVKVFTPENSDELQPGVREVVRCYIAQKRKISVGDKMAGRHGNKGVVSR
ILPQEDMPYLPDGTPLDIVLNPLGVPSRMNIGQVLEVNLGYAAKACGIKVMTPVFDSARE
NDIGDTFDTARELWHGENAPAYPTKLPKIMGEKGHIIDFSKIELDRDGKTTVYDGRTGEK
FDNRVTVGYMYYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLQEILTVKSDDVEGRVKTYEAIVKGEPIPQPGIPESFRVMLKELQSLGMDVVVQ
DKDGNEIDMRQNFDDEETGFDMRDVAGSETVTNENELLNDYTIKDADAGFDDPSVLEDDN
SGSAAPASDEVDF
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaagtcaagcccgtaaagctcggcaaaaccgagcgcatgagcttctcccacatc
gacgaagtcatcagtatgccgaacctgatcgaggtccagaagaactcttaccagtggttc
ctggacgagggcctgaaagaggtcttccacgacatcggcaccattgaggactacaccggt
aacctggcgctgagcttcgtggacttccgtctggataaggagcccaagtacagcatcaag
gagtgcaaggagcgcgacgtgacctacgctgcccccctgcgcgtgactgcccgtctgctg
aacaaggagaccggcgaggtcaaggaccaggaaattttcatgggcgacttcccgctgatg
accgatgcgggcacctttgtgatcaacggtgccgagcgtgccattgtcagccagctggtc
cgttctcccggcgtattctacggagatgccaaagataaggtaggcaacgacctgtacagc
gcaaccatgaaccccaaccgcggtgcatggctggagtacgagaccgatgccgccaacgtg
ttctatgtccgtatcgataagaaccgtaagctgcctgtcaccgtgctgtgccgtgcgctg
ggcctttcctctgatgaggagatcctgaacttctttggcgaggatgagcgcatcctggcc
actctggagaaggacaccaccaagaaccaggacgagggcctgctggaggtctaccgcaag
ctgcgccccggcgagccccccacggtggagtccgctaccaaccagatcaacatgctgttc
ttcgatccgcgccgctacgacctgtctcgttttggccgctacaagatgaacaagaagctg
tctctggcccgccgcatcaccggctttgttgccgctgagaacatcgttgctcccctgacc
ggcgagatcatcgttgaggccaagggcaagatcacccgtgagctggccgagaaggcagat
gccgccggtgtggataccgttattctgagcattgatggcaagaaggtcaaggtcatcacc
aacggctgtgtggacgcacagggcttcttctcctttgatgtcaaggagtgcggcatcaac
gagcgctgctcctttgatgagatcaagaagatcctcgacaccacctccgatgtggaggag
cagaaggaaatgctccgccgcaaccatgaccagctgatcggccgcaccgtcaccgtgaag
gacatcctgtcctccatcaactacctgaacggtctgggccacggcgttggcaccaccgat
gatatcgaccatctgggcaaccgccgcatccgcagcgttggtgagctgctgcagaaccag
ttccgcatcggcttctcccgcatggagcgcgtcatccgtgagcgcatgactctgcagagc
caggatcagagcgttatcaccccgcaggcactgatcaacatccgtcctgtggttgccgcc
atcaaggagttcttcggctcctctccgctgtctcagttcatggatcagaacaaccctctg
gctgagctgacccacaagcgccgtctgtctgctctgggccccggcggtctgagccgtgac
cgcgcaggtttcgaggttcgtgacgttcactacagccactatggtcgtatgtgccccatt
gagacccctgaaggccccaacatcggtctgatctcctatctggcatcctacgccaagatc
aacgagtacggcttcgttgaggctccctaccgcaaggtcaaaaagacttacgacgaaaac
ggcaagctgatcgatcaggtcgttaccgatgaagtggagtatatgaccgctgacgttgag
gacgagtacgttgttgctcaggccaacgagcctctggatgagaccaagcacttcatccgt
ccccgtgtttctgcccgccgccgcgatgacatcctggaaatcgatgccgataaggtcgat
tatatggacgtttcgccccgaatgatggtctctgttgcgaccgcctgcatccccttcctg
gagaacgatgactgtaaccgtgctctgatgggctccaacatgcagcgtcaggcagtgcct
ctgatggtcacccagcagcccatcgtggctaccggtatggaatacaaggctgccaccgac
tccggcaccgctgttctggcaaagaacgacggtatcgttgagaagatggatgccgaccac
gtcaccgtccgcaatgcacagggcggcgtggacaactacccgctggtcaagtttgcccgc
tccaacgcaggcacctgcatcaaccagcgtcccatcgttgaagtgggcgagagcgtcaag
gccggtcaggtgctggccgacggcccggccatgcgcaacggtgagatctctctgggtaag
aacgccctgatcggctttatgacctgggagggctacaactacgaggacgctgtcctgctg
aacgagaagatcgtccgcgaggatgtgtatacctcgatccatattgaagagtacgagacc
gagtcccgtgacaccaagctcggacctgaggagatcacccgtgatatccccaacgtctcc
gaggatgccctgaaggatctggacgagcgcggcatcatccgcatcggtgccgaggtcaag
agcggcgacatcctggtcggcaaggtcaccccgaagggtgagaccgagctgaccgctgag
gagcgcctgctccgcgccatcttcggcgagaaggcccgcgaagtccgtgatacctctctg
cgcgtgccccacggcgagtacggcatcatcgtggatgtcaaggtctttactcctgaaaac
agcgatgagctgcagcccggtgtccgcgaggtcgtccgctgctacatcgctcagaagcgt
aagatcagcgtcggcgataagatggcaggccgtcacggcaacaagggtgtcgtttcccgt
atcctgccgcaggaggatatgccctacctgcccgacggcaccccgctggacatcgtgctg
aaccccctgggcgttccttcccgtatgaacatcggtcaggtgctggaagtcaacctgggc
tacgctgccaaggcatgcggcatcaaggttatgacccccgtgttcgattccgcgcgtgag
aacgacatcggcgataccttcgacaccgcccgtgagctgtggcacggtgagaatgctccc
gcatatcccaccaagctgcccaagatcatgggtgagaagggccacatcatcgacttctcc
aagatcgagctggaccgtgatggcaagaccaccgtttacgatggccgtaccggcgagaag
ttcgataaccgcgttaccgttggttatatgtactacctcaagctgcatcacctggtcgat
gataagatccatgcccgttccaccggcccctactctctggtcacccagcagcctctgggc
ggcaaggctcagttcggcggtcagcgcttcggcgagatggaagtctgggctctggaagct
tacggtgccgcttacaccctgcaggagatcctgaccgtcaagtccgatgacgttgagggc
cgtgtcaagacctacgaggccattgtcaagggcgaacccatcccgcagcccggcatcccc
gagtccttccgcgttatgctgaaggagctgcagtctctgggtatggacgttgtggtccag
gacaaggacggcaacgagatcgatatgcgccagaacttcgacgacgaagagaccggcttt
gatatgcgtgatgttgcaggttccgagactgttaccaacgagaatgagctgctgaacgat
tacaccatcaaggatgctgacgcaggcttcgatgatccttctgtgctggaagatgacaac
tccggcagtgcggctcccgcttccgacgaagtggatttttaa
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integrated database retrieval system
