Flavobacterium enshiense: LZF87_00130
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Entry
LZF87_00130 CDS
T08644
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
feh
Flavobacterium enshiense
Pathway
feh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
feh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LZF87_00130 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
feh03021
]
LZF87_00130 (rpoB)
03400 DNA repair and recombination proteins [BR:
feh03400
]
LZF87_00130 (rpoB)
Enzymes [BR:
feh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LZF87_00130 (rpoB)
Transcription machinery [BR:
feh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LZF87_00130 (rpoB)
DNA repair and recombination proteins [BR:
feh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LZF87_00130 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
KOW2_Spt5
AGA2
Motif
Other DBs
NCBI-ProteinID:
UOK42566
LinkDB
All DBs
Position
complement(35373..39185)
Genome browser
AA seq
1270 aa
AA seq
DB search
MLTNQTERLNFASTKNIPDYPDFLDIQVKSFKDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNQFVLEFLDYFVDPPRYTIEECIDRGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKSGLKKYIGRRL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTLLDKDNVEEIVDANVKSILLHKEDNN
QADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLDIPMEKQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAK
VNGMGFIETPYRKVTNGTVDLVSTPVYLSAEEEEGKMIAQANIEMDQTGKITAENVIARE
EGDFPVVDPTVVHYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPESP
IVGTGLERQVATDSRVLINAEGEGVVEYVDANMITIKYDRTDAERAVSFDPDEKTYQLIK
FRKTNQSTSINLKPIVRKGDRVAKGQVLCEGYATQNGELALGRNLQVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHVDDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFA
RAVKDKRKRSKDKDDLAVLETQFEVKFVELKDKLVEKLFEIVNGKTSQGVMNDLGEEVLP
KGKKYTQKMLYAVEDFAHLTKGQWTTDDESNAMVNDLIHNYKIKLNDLQGALRREKFTIT
VGDELPSGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVAKIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGKKLGRKYATPIFDGASLDQINALTDEAGVPRFGHTY
LYDGGTGERFHQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYESIVKGETMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaaatcagactgaaagattaaatttcgcctcgacgaaaaacatcccagactat
ccggatttcttggatattcaggtaaaatcttttaaagattttttccaattggaaaccaaa
tctgatgaaagaggcaacgaaggtctttacaataccttcatggaaaacttcccaattact
gatacaagaaatcagttcgtattggaattcctagactactttgttgatccaccccgttat
acaattgaagagtgtatagacagaggtttaacgtatagtgtgccattaaaagcacgtttg
aaactgtactgtacagaccctgagcatgaagattttgaaacaattgtacaggatgtatat
ttaggtacaatcccgtatatgacaccaagcggtacctttgttatcaacggtgcagagcgt
gttgttgtatctcagttacaccgttcaccgggtgttttcttcggacaatctttccacgct
aacggaacaaaattatactctgccagagtaattccttttaaaggatcttggattgaattc
gctaccgatatcaacagcgtaatgtatgcttatatcgatagaaagaaaaaattacctgtt
acgactttattccgtgctatcggattcgagcgtgataaggacattcttgaaatctttgac
cttgctgaagaaatcaaagtttcaaaatcaggtcttaaaaaatatattggtagaagactt
gcggctcgtgtattgaacacttggcacgaagatttcgtggatgaggatacaggagaggtt
gtatctatcgagcgtaacgagattatcttagatcgtgacactttgttagataaagataat
gtagaggaaattgtagacgcaaacgtgaaatctatcttgttacacaaggaagataacaac
caagcggattatgcaattatccacaacacgttgcaaaaggaccctacaaactcagaaaaa
gaagctgtagagcacatctaccgtcagttgcgtaatgcagaaccgcctgatgaggaaact
gctcgtggtattatcgataaattattcttctcggatcagcgttataacttaggtgaagtt
ggtcgttacagaatgaataaaaaattaggtttggatatcccaatggaaaaacaagtgttg
accaaagaggatatcatcacaatcgtgaagtatttgattgagcttatcaactctaaagca
gagattgatgatatcgatcacttatcaaaccgtcgtgttagaaccgttggagaacaattg
tctgcacaatttggtgttggtcttgctcgtatggcaagaacgatccgtgagagaatgaat
gttcgtgataacgaggtgttcacgccaatcgatttgatcaatgcaaaaacattatcatcg
gttatcaactctttcttcggtaccaaccagttatctcagtttatggatcaaaccaatcca
ttagcggagatcacacacaagagaagattgtctgccttagggcctggaggtctttcgaga
gagagagccggattcgaggtgcgtgacgttcactatactcactacggacgtttatgtccg
attgaaacaccagagggaccaaacattggtttgatttcatctcttggggtttatgcgaaa
gtaaacggaatgggctttatcgaaacaccttaccgtaaggtaaccaatggtactgtagat
ttagtttcaactcctgtttatttaagtgcagaagaagaagaaggtaagatgattgctcag
gcaaacatcgagatggaccaaaccggtaaaattacggctgagaatgttattgctcgtgaa
gagggtgacttcccggttgtagatcctacggttgttcattatactgacgtagcaccaaac
cagattgcttcgatttcggcttcgttgattccattcttagagcatgatgatgcgaaccgt
gcgttgatgggatcgaacatgatgcgccaggccgtaccattgttacgtcctgaatcgcca
attgttggaactggtcttgagcgtcaggtggctactgattcccgagtacttatcaatgca
gaaggtgaaggagttgttgagtatgtagatgcaaacatgattactatcaaatacgataga
actgatgcagagcgtgctgtaagcttcgatccggatgagaaaacatatcagttaatcaag
ttcagaaaaaccaaccagagtacatctatcaacttgaagcctattgttagaaaaggtgac
agagttgcaaaaggacaagtactttgtgaaggttatgcaacgcaaaacggagagcttgct
ttaggtagaaaccttcaggtagcgttcatgccttggaaagggtataacttcgaggatgcg
attgtaatttctgaaaaagtagttcgtgatgatatctttacttcaatccacgtagacgat
tactcattagaggttcgtgatacgaaattgggtaacgaagagttaacgaatgatattcca
aacgtttctgaagaggctactaaagacttggatgaaaacggtatgatcagaatcggagca
gaggttaaacctggcgacattctaatcggaaaaattacaccaaaaggagaatcagatcca
actcctgaagagaagttattaagagcgatcttcggagataaagcgggtgatgtgaaagat
gcttcgttaaaagcatctccatctttacacggtgtggttttagataaaaaattattcgcg
agagcggtaaaagataaacgtaaacgttctaaggataaagacgatttagcagttttagaa
actcagtttgaagtgaaattcgttgaattgaaagacaaattggttgaaaaattattcgaa
atcgttaacggtaaaacgtctcagggtgtaatgaatgatttgggtgaagaagtattgcca
aaaggtaagaaatacacgcaaaaaatgctttacgctgtagaggatttcgctcacttaact
aaaggtcagtggactacagatgacgagtcaaatgctatggtaaatgatttgatccacaac
tacaaaattaagttgaacgatttacaaggtgcattacgtagagagaaattcacgatcact
gttggagatgaattaccatcaggtatcctgaaacttgctaaagtatacatcgctaagaaa
cgtaaactgaaagttggagataagatggcaggtcgtcacggtaacaaaggtatcgttgcg
aaaatcgttcgtcaggaagatatgccattcttagaagacggaacaccggtagatatcgta
ttgaatccactaggggtaccatctcgtatgaacatcggacagatttatgaaacggttctt
ggatgggcaggtaagaaattaggaagaaagtatgctacgccaattttcgacggagcttct
cttgatcaaatcaatgccttgacagacgaagcaggagttccaagattcggtcatacgtat
ttgtatgacggaggaactggagagcgtttccaccagccggcaaccgtaggtgtgatctat
atgttgaaattaggacacatggttgacgataagatgcacgcacgttctatcggtccatac
tcattgatcacgcagcagcctcttggaggtaaagcgcagttcggaggtcagcgttttgga
gagatggaggtttgggctcttgaggcgtatggtgcttcaagtactttaagagagatcttg
acagttaaatcggatgacgttatcggtagagctaaaacttacgaatcaattgttaagggt
gaaactatgccggagccaggactacctgaatcattcaatgtattgatgcatgaattgaaa
ggtcttggattagacatcagattagaagaataa
DBGET
integrated database retrieval system
