Fusarium falciforme: NCS54_00521100
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Entry
NCS54_00521100 CDS
T09198
Name
(RefSeq) Hypothetical protein
KO
K12600
superkiller protein 3
Organism
ffc
Fusarium falciforme
Pathway
ffc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCS54_00521100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffc03019
]
NCS54_00521100
Messenger RNA biogenesis [BR:
ffc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
NCS54_00521100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_22
TPR_2
TPR_16
TPR_19
TPR_8
TPR_1
TPR_17
TPR_CcmH_CycH
TPR_14
TPR_11
TPR_12
TPR_7
ARM_TT21_N
ANAPC3
TPR_6
ARM_TT21_C
ARM_TT21
TPR_Slam
T7SS_EccA1_N
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
77791160
NCBI-ProteinID:
XP_053006698
LinkDB
All DBs
Position
4:complement(join(1479069..1483215,1483276..1483394))
Genome browser
AA seq
1421 aa
AA seq
DB search
MSGTKAALKAINDAIRQQKFEDAVTKARELIEKDSKNYQGHIFLAFALDKKDRLDEAQET
YRSATWLRPQEAQAWQGLIKLFEKQNAKKLVDYQQAVVNLAQIYHGADDLYKAQDVVDKF
VDFARVHGDELQYADALWIQLPESPLYGILEGRFPHPAKTYETIAHLIEKFEKHRINTLI
GERRTKLGAKLSEVTIEAKREVYSQSKLEHVYRQLINWTSDDDLRRTYEEKLLQLCYDRL
LVAPAGAEKDQEREKVVDIANGMVAIKHPYRLAWDIAIEWQDKKETKEWDVDILRAYCSF
FPESDLYKVITSFLTSPISPFPPEKPQEKAAPDGTGSDESEDDEDGGVPTLVVPLTDEDR
LNMMTEGITTADSVFAYRLVGQYLLHIGEYESTVELMRKALALLVKERKKTGLSFTHTED
AYYLSLGTALVYYQSPRHHQEAKNLFDKVLERDTTSTSALIGVGLIYEEEEEYDQAIDFL
SRALKRDEANIRVKSEAAWVKALKGDWQTAKEELQECLEPLEKQGTASKELLGETQHRLG
VCIWNIDPSKAARKQRKGECAYAYWLSALNNNLSHAPSYTYLGVFYADYAKDKNRSRRCF
QKALELSHAEVVAAERLARSFADDGDWDRVELVARRIVESGKVKPPPGSKRKGISWPFAA
LGVAELNKQDFHKAIVSFQAALRITPEDYHSWVGLGESYHNSGRHIAATKAILNAQRLEE
ETEADISGDTWFTKYMLANIKRELGEYDESISLYKAVIETHPDEEGVIIALMQTMVDNAL
TSVEKGLFGKATQLAIDTIEFAKATEGGVLETFNFWKAVADACSVFSLVQSRTKDFPTQS
IRELLEGSSQEAYEIFASVDKVGTEVVFAKGLYADDEQPGVDLTRCIHATILCHKQGVHI
SSNDRHAQAVAYYNLGWAEHRAHVCLPSELRKKSSNYVKAAVRCFKRAIELEAGNSEFWN
ALGVVTSEINPSVSQHAFARSLYLNERSPVAWTNLGTLALLSGDIQLANEVFTRAQSTDP
DYAHAWLGQGFVALLHGDAKEARGLFTHAMEIADSSSEPTRRHYSSSMFDHILTVTPNDL
NVANLIQPLFALNQFQSLKPQDLAFGHLATLLQERTHESGRAVDTLEKISSTIEADYEST
ESSESLAKFALAKTDLARAYLAAGSYEKAIECGELALGLSSEEAENELSSEQRKKARLSA
HLTVGLAQYFDSQFDEAVLCFESALEESDGNPDAVCLLAQVLWAQGSEASRDRAREALFE
VIESRPDHVQSVLLLGVIALLDNDEDSLEAVVEELHGLRTNDKVTASEQSKIGQVLRAIA
TLGEGKTEDDMKTQIQTDIMLYPDLPHGWAALAESAGDEHAAQMALKVAARGIPPWGLLE
AQDLAEAYAGTETAGDAQTAAALAPWEQSGWNSLAVATEGI
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaaccaaggcagctctcaaagcaatcaacgatgctattcgccagcaaaagttt
gaagatgctgtgaccaaggcccgagagcttatagagaaggactcgaagaattatcaaggg
cacatcttcctggcatttgctttggacaagaaggacagactcgatgaggctcaagagacc
tatcgctctgcgacatggcttcgtccccaggaggcacaagcttggcagggcctgatcaag
ctgtttgagaagcagaacgccaagaagctggtcgattaccagcaggctgtcgtcaacctg
gcccagatctaccacggtgccgatgatctgtacaaggcccaagacgtggtggacaagttt
gtcgactttgctcgtgttcacggcgacgagctgcagtacgccgacgctctctggatacag
cttcccgagagccccctctacggcattctcgagggccgattcccgcatcccgcaaagact
tacgagaccattgcgcacctgatcgaaaagttcgagaagcatcggataaacaccctcatt
ggagaacgccggacaaaactgggcgcaaagctatccgaggtcaccatcgaggccaagcga
gaggtctacagccagagcaagctcgaacacgtctaccgtcagcttatcaactggacaagc
gacgatgatctcagaaggacgtatgaggagaagctcttgcagctttgctacgaccgactg
ctcgttgcgccagctggtgctgaaaaggaccaagagcgcgagaaggtggttgacattgcc
aatggcatggttgctattaagcacccctacagacttgcctgggatatcgcgatagagtgg
caggacaagaaggagaccaaggagtgggatgttgacatcctgagggcgtattgctcattc
ttccccgagagcgacctttacaaggttatcacgagcttcctgacgagtcccatctcgcct
tttcctccagaaaagccccaggagaaagcagcaccagatggtaccgggtccgatgagagc
gaagatgacgaggatggcggagtgcctacccttgttgttcccctgaccgatgaggaccgt
ctgaacatgatgacagaaggcatcaccactgccgactctgtttttgcctatcggctagtt
ggccagtatttgcttcacattggagaatatgagagtactgtcgaactgatgcgaaaggcg
ctggccctccttgtcaaggagcgcaagaagacagggctatcgtttacccacactgaagat
gcctattacctctcgcttggtacagccttggtgtactaccaatccccgcggcatcatcag
gaagcaaagaacctcttcgacaaggttctcgagcgagacactacttctacttctgccctg
attggtgttggcctcatttacgaagaagaggaggaatacgaccaggccattgacttcctt
agtcgtgcattgaaacgcgatgaggccaacattcgagtcaagtcggaagccgcctgggtc
aaggcgctcaagggagattggcaaacagcgaaagaagagctgcaggagtgtcttgagccc
ctagaaaagcaaggaacggcctcgaaggagttgctgggcgagactcagcatcgtctggga
gtttgtatttggaacatcgacccaagcaaggcggcgcggaaacaacgcaagggggagtgc
gcgtatgcctactggctgagtgcactcaacaataacctcagccacgcgccatcatacaca
tatctcggtgtcttttacgccgactatgccaaggacaagaacagatcgcggcggtgtttc
caaaaggcactggagctttcacacgccgaggtggttgcagctgagcgattggctcggtcc
tttgcggatgacggagactgggatagagttgaactggtcgctcgccgcattgttgaatcg
ggcaaggtgaagccaccgcctggatctaagagaaagggtatcagttggccatttgcggcc
ctgggagtggccgagctgaacaagcaagactttcacaaggccattgtgtcattccaggcg
gcgcttcgtatcacccccgaggactaccactcttgggttggtcttggagagagttatcac
aactctggtcgtcatatcgctgccaccaaggccattctgaacgcccagaggctcgaggag
gagactgaggcggacatctcaggggacacctggttcacaaagtacatgcttgccaacatc
aagcgagaactcggcgaatacgacgagtccatctctctgtacaaggcggttatagagaca
catcccgacgaggagggtgtcattattgctctgatgcagacaatggtggacaatgctctt
acgtcagttgagaaggggttgtttggaaaggcaactcaacttgctattgacacaatcgag
tttgccaaggcgaccgagggcggcgtgctcgagacgttcaacttttggaaggccgtggct
gatgcttgctcggtcttttcgttagtacagagccgtaccaaggactttcccactcagtct
atccgagaactgcttgaaggcagctcgcaagaggcttacgagatctttgcgagcgtggac
aaggtgggcactgaggtggtgtttgccaagggcctgtatgcagatgatgagcaaccaggt
gtcgacctcactcgatgcatccacgctacaatcttgtgccacaagcaaggcgtgcacatc
tcatccaacgaccgtcacgctcaggcagtggcctactacaaccttggatgggcagagcac
cgtgcccacgtctgcctcccctcagaacttaggaagaagtctagcaactacgtcaaggct
gcggtgaggtgcttcaagcgcgccatcgaactggaggctggaaactcggagttctggaat
gctttgggtgttgtgacgagtgagatcaacccttcggtgtctcagcatgcctttgcgaga
agtctctatctcaatgagaggagccctgtggcctggacaaacctgggaacattggctctc
ttgtctggggatattcaactggccaatgaggtctttacacgagctcagtcaacagatcct
gactacgcacatgcttggctgggacagggtttcgtggctctcttacatggcgatgcgaag
gaagctcgaggactattcactcatgccatggagattgccgactcatcctctgaaccgact
cgacggcattactcgagctccatgtttgaccacatcctcacggtgactcccaacgacctc
aacgtggcgaacctcatccagcccctctttgcgctcaaccagttccagagcctcaaaccg
caggacttggcctttggacacctagcaaccctccttcaggaacgtacacacgagagtgga
cgggctgtcgacacgcttgaaaagatctcttcgactatcgaggctgactatgagagcacc
gagtcgtctgagagccttgctaagtttgctctggccaagactgatctggcgagagcttac
cttgcggctggctcttatgaaaaggctatcgagtgtggtgagctggcgcttggtcttagc
agcgaggaggcagagaacgagctttccagtgagcagcgtaaaaaggcacgactttctgct
cacttgacagttggtctcgcgcagtactttgacagtcagttcgacgaggctgtcttgtgc
ttcgagtctgctctggaagagtcagatgggaaccctgacgcagtttgtctgttggcccag
gttctctgggctcaaggatccgaggcctcgcgagatagggcacgggaagcattgtttgag
gtgattgagagccggcctgatcatgttcagtcggtgctcctccttggtgtcattgccctg
ctcgacaatgatgaggatagtctcgaggcagttgtggaagaactacatggcctccgcaca
aacgacaaggtgacggcttcagagcagtccaagattggccaagtactacgtgcaatcgcc
acgctcggtgagggcaagacagaagacgacatgaagactcagatccagacggacattatg
ctgtaccctgacctgccccacggctgggctgctctggcagaatctgcgggagacgaacac
gcggcgcagatggcgctcaaggtcgcagccaggggtattcctccatggggcctactcgag
gcccaggatctagccgaggcgtatgctggaactgaaactgctggtgatgctcagacggcc
gcggcgctggcgccttgggagcaaagtggatggaactcgctggccgtcgcaactgaagga
atctaa
DBGET
integrated database retrieval system
