Fusarium falciforme: NCS54_01011600
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Entry
NCS54_01011600 CDS
T09198
Name
(RefSeq) MRNA cleavage and polyadenylation factor CLP1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ffc
Fusarium falciforme
Pathway
ffc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ffc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NCS54_01011600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffc03019
]
NCS54_01011600
Enzymes [BR:
ffc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
NCS54_01011600
Messenger RNA biogenesis [BR:
ffc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
NCS54_01011600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
ATP_bind_1
AAA_16
CbiA
AAA_28
AAA_24
AAA_22
IstB_IS21
KTI12
SRPRB
CoaE
Motif
Other DBs
NCBI-GeneID:
77796065
NCBI-ProteinID:
XP_053011411
LinkDB
All DBs
Position
8:join(907753..907788,907872..908661,908713..908979,909031..909293)
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AA seq
451 aa
AA seq
DB search
MSIPGLGQIPSQPTASSTRVLALRPVCEWRFQVSHGSSVIVKVLSGTAEKDGVELAPRNA
YNFSGVKSKILTWHGCELEIDGRCDSESIADYGNPTENVANSHLNLHGQLNDMRQAAARD
GREGPRVLITGGVNTGKTTLAKTLTSYATRQGYQPLVVNADPKEGLLSLPGTLSASVLAT
VMDPEAVDGWGSTPTSGPSSVPVKLPLVFYYGLESPEEDPDFYRELVSKLAGSVSGRLNE
DENVKSSGVIIDGTGLPEQTKDGFDLVAHIVDEFSINVLIVVGSTHLGGELTKRFANERT
SLGEPISVVPLDKSDGVVERDEMFMQHAREAAIKEYFFGDSRRTLSPLIQQVDFDNVVVY
HTPEQPTYNGETLAREEPSTPMQHWTLAIMHATPKESPDTVRAAGVMGFLYVSDVDEERR
KIKLLSPVSGRLGDQPLVWGKWPEPYINLLG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattccaggcctgggccagatcccctcgcagcccaccgcctcttctacccgcgtc
ctcgccctccgtcccgtctgcgaatggcgattccaagtgtcccacggctcgtccgtcatt
gtcaaggtcctctctggcacagctgagaaggacggcgtcgagctagccccccgcaatgcg
tacaacttttccggcgtcaagtccaagatcctgacctggcacggatgcgagctcgagatt
gacggccgctgcgacagcgaatccatcgccgactacgggaacccgaccgagaatgtcgcc
aattcgcatctgaacctgcatgggcagcttaacgatatgcgccaagcggcggcaagagat
ggaagagaaggaccgagggttctcattacaggaggagtcaacacgggcaagacgacgctg
gcgaagactctgacgagctatgcgacaagacagggctaccaacctctggtggtgaacgca
gaccccaaagaagggctgcttagtcttccagggacgctgagcgccagcgtgcttgcgact
gtcatggatcctgaggcagtggacggttggggtagtacgccaacgagtggtccaagcagc
gtcccggtcaagctacctttggtgttctactatgggctagagtctcccgaggaggatccc
gacttttaccgtgagcttgtcagtaaactggcaggtagcgtgagtggacggttgaacgag
gacgagaatgtgaagagttcaggtgtcatcatcgatggcacgggtctccccgagcagacc
aaggacgggtttgaccttgttgcgcatattgtggatgaattctccatcaatgttctcatt
gtggttggctccacgcatcttggtggagagttgaccaagcgctttgcaaacgagcggacg
agccttggagagcctatcagtgtggtgcccctggacaagtctgatggcgtcgttgagcgt
gatgaaatgtttatgcagcacgcaagggaggctgctatcaaggagtacttctttggcgac
tcgagacggaccttgagccccctgattcagcaggtagactttgacaatgtcgtcgtgtac
catacaccagagcaaccgacctacaacggcgagacattagcccgcgaagagccgtcgacc
ccaatgcaacactggacgctggccattatgcacgcgacacctaaggagtcgcccgatacg
gtccgcgccgcaggcgtcatgggtttcctctacgtgtccgatgtggacgaggagcgacgc
aagatcaagctactctcgccggtgagcgggcggttgggcgaccagccactcgtgtggggg
aagtggccggagccgtacatcaacctgctcggatga
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