Fulvia fulva: CLAFUR5_02335
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Entry
CLAFUR5_02335 CDS
T08195
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ffu
Fulvia fulva
Pathway
ffu03018
RNA degradation
ffu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLAFUR5_02335
09123 Folding, sorting and degradation
03018 RNA degradation
CLAFUR5_02335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_02335
03041 Spliceosome [BR:
ffu03041
]
CLAFUR5_02335
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CLAFUR5_02335
mRNA degradation factors
5'-3' decay
Lsm complex
CLAFUR5_02335
Spliceosome [BR:
ffu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CLAFUR5_02335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
71982213
NCBI-ProteinID:
XP_047758587
LinkDB
All DBs
Position
2:complement(join(99884..99949,100422..100628))
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AA seq
90 aa
AA seq
DB search
MLVELKTGETLNGHLVSCDTYMNITLKEVVQTSPDGDKFFRLPECYVRGNNIKCLRVPDE
VVDMVKEQQQKLTRSLTADHNPQQSHQRQR
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtcgaactcaaaaccggcgaaaccctcaacggccacctcgtctcctgcgacacc
tacatgaacatcaccctcaaagaagtcgtgcaaacgtcccccgacggcgacaaattcttc
cgactcccggagtgttacgtgcgtgggaacaatatcaagtgcttgagggtgccggatgag
gtcgtggatatggtcaaggagcagcagcagaagctcactcggtctttaacagccgaccac
aaccctcagcagtcccaccagcgacaacgctaa
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