Fulvia fulva: CLAFUR5_07500
Help
Entry
CLAFUR5_07500 CDS
T08195
Name
(RefSeq) General transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ffu
Fulvia fulva
Pathway
ffu03022
Basal transcription factors
ffu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CLAFUR5_07500
09124 Replication and repair
03420 Nucleotide excision repair
CLAFUR5_07500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ffu03021
]
CLAFUR5_07500
03400 DNA repair and recombination proteins [BR:
ffu03400
]
CLAFUR5_07500
Enzymes [BR:
ffu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLAFUR5_07500
Transcription machinery [BR:
ffu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CLAFUR5_07500
DNA repair and recombination proteins [BR:
ffu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CLAFUR5_07500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
AAA_34
Motif
Other DBs
NCBI-GeneID:
71987378
NCBI-ProteinID:
XP_047762939
LinkDB
All DBs
Position
6:complement(join(4216203..4218574,4218637..4218808))
Genome browser
AA seq
847 aa
AA seq
DB search
MAPKRKGSTAPSARPSKRVASGVNTPQSMSDDDYDSEGDVSDEMMSEGDKKAPKKYDTVV
KKFQPQSYVAHSGPDAASTLFKPGRDFSTEQLKPDHHMRPLWIDPANGRVVLETFAPLFK
RAQDFLINIAEPQSRTTNMHEYTINPHSLFAAVSVGLTEQDIIQELDTFSKTTIPENIIK
FVSEVTQSFGKIRLVLKHNKYFVESSDPSVLQMLLRDPEIARCRVEDTDELQTDKAAKRG
NMLIQGTAEAARMKEAEAQEQARLAQKREEDDDESDDEFGGREADKDMAAYLREEEEEED
DVDVVHSFEVRGDMIQKVQEHCNVTLGLPLTEEYDFHADERNAKLDIKLRPVVQIRYYQE
QALAKMFGNGRARSGIIVLPCGAGKTLVGITAACTIAKSAIVLCTSAMSAVQWKEEFKKW
SNIDPDDIAIFTSGEKQQLHHKAGVIICTYSMVTQNARRAHDSAKVMDFITSREWGLMIL
DEVHVVPADMFRRVTERIKTHSKLGLTATLLREDDKIKDLNFLIGPKLYEANWLQLSEEG
HIARVQCAEVWCPMTTEFYKAYLEAKTTNKRSLLSTMNPRKYQACQYLIDYHERRGDKII
VFSDNVYALKRYAEGLTKPYIFGDTSQRERELVLQNFQQNDAVSTIFLSKIGDTSLDLPE
ATCLIQVSSHYGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTNEMYYSSKRQAFL
VDQGYAFKVITHFKGLAEMPGLHYNNQHDRMDLLQDVLLQSDTAGDAEDITDSLWNDKNV
SKSKKKGSGVRRQAGTLSNLAGGDSMAYIEGKKGAANKALAKPRSSFFKKEDRLKEKKKK
QAQGLLD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaagcgtaagggatccacagcaccaagtgcgcgcccgtcgaagagagtcgca
tcaggcgtcaacaccccgcagagcatgagcgacgatgactacgactcggagggcgatgtc
agcgacgagatgatgagcgagggagacaagaaggcgccgaagaagtacgacacggtagtc
aagaaattccaaccacagtcctacgttgcccactcaggccccgatgccgccagtacactc
ttcaagcccggtcgcgacttctccacagagcagctcaagcctgaccaccacatgcgtccg
ctatggatcgacccagccaacggtcgagtcgtcctcgagacctttgcgcctctgttcaag
cgcgcacaggacttcctcatcaatatcgcagagccacagagccggacgacgaatatgcac
gagtacacgattaaccctcacagcttgttcgctgccgtgtccgtaggactgacggaacag
gacattatccaagagcttgacaccttttccaagactaccattccagagaacatcatcaag
tttgtgagcgaagtgactcagtctttcggtaagatacggcttgtcttgaagcacaacaag
tacttcgttgaaagcagcgatccttcggtgctgcaaatgctgttaagagacccagagatc
gcccgatgtcgggtggaagatacggatgaattacagaccgacaaagctgccaaacgtggc
aatatgctcatccagggcactgccgaggctgcacgcatgaaggaagcggaggcacaagag
caggcgagattggcacaaaagcgagaggaagacgatgacgagtctgacgatgagttcggc
gggcgcgaggcggacaaagacatggccgcctatttacgagaagaggaagaggaagaagac
gatgtcgacgttgtacactctttcgaggttcgaggtgacatgatccagaaagtgcaagaa
cattgcaacgtcacccttggactaccactcaccgaggagtacgacttccacgccgacgaa
cgcaacgccaaacttgacatcaagcttcggcctgtcgtgcagatccgatactaccaggaa
caggcgctggctaagatgtttggtaacggccgtgctcgtagcggaatcattgttctgcca
tgtggtgcgggcaagacgctcgtcggtatcactgcggcatgcacaatcgccaagagtgcc
atcgtactatgtaccagtgccatgagtgctgtgcagtggaaggaagagttcaaaaagtgg
tccaacattgacccagatgacatcgccatcttcacatcaggcgagaagcaacagctgcat
cacaaagcgggagtcatcatctgcacttatagtatggtgacgcagaacgcgcggcgtgcg
cacgacagcgccaaagtcatggacttcatcacctctcgggagtggggcctcatgattctg
gacgaggtgcatgtcgtgccagcggatatgtttcgacgagtcaccgaacgcatcaagaca
cattcgaaactgggtctgacagccactctgctgcgagaagatgacaagatcaaggatttg
aacttcctcatcggacccaagctttacgaggccaactggttacaactcagcgaggaaggc
catattgctcgggttcaatgcgctgaagtgtggtgtcccatgacgacggagttctacaag
gcttacttggaggccaagacgaccaacaagcgtagcttgctatcaaccatgaatccgcga
aagtatcaggcttgccagtacctgatcgactatcacgagagacgaggcgacaagatcata
gtattctccgacaacgtctacgcgctgaaaagatacgccgaaggccttacaaagccatac
atcttcggcgacaccagtcagcgcgagcgcgaactcgtcctccaaaacttccaacagaac
gatgctgtctccactatcttcctctctaagattggcgacacgtcactcgacctaccagaa
gctacctgcctcatccaagtctcgtcccactatggttctcgacgacaagaagcgcaacgg
ctcggtcgcatcctccgagccaagcgtcgtaacgacgaaggcttcaatgcattcttctac
agtctcgtcagcaaagacaccaacgagatgtactactcatccaagcggcaggcattcctt
gtcgaccaaggctatgcattcaaggtcatcacacatttcaaaggtctggcagaaatgccg
ggcctccattacaacaatcaacacgatcgcatggacttactccaggatgttctactccag
tctgatactgccggcgatgccgaagacatcacagacagtctttggaacgacaagaatgta
tcaaagtccaagaagaaggggtctggcgtcagacggcaggcagggacattgtctaacctt
gctggtggcgacagtatggcgtacatcgaaggcaagaagggcgcagcgaacaaggctctg
gccaagccgcgcagctcgttcttcaagaaggaagaccgactgaaggagaagaagaagaag
caggctcaaggattattggattag
DBGET
integrated database retrieval system
