Fulvia fulva: CLAFUR5_10300
Help
Entry
CLAFUR5_10300 CDS
T08195
Name
(RefSeq) General negative regulator of transcription subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ffu
Fulvia fulva
Pathway
ffu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ffu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAFUR5_10300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ffu03019
]
CLAFUR5_10300
Messenger RNA biogenesis [BR:
ffu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CLAFUR5_10300
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CLAFUR5_10300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
71990178
NCBI-ProteinID:
XP_047764498
UniProt:
A0A9Q8PCY7
LinkDB
All DBs
Position
7:join(2442866..2443844,2443908..2449783)
Genome browser
AA seq
2284 aa
AA seq
DB search
MSHPQHSNSGNDDAPELSTRLPPARTSERGSGSGLTPIQSRPLDHLQSHIRPSPQLRTQL
SPTASTSTPHYNIAAVAANQHIRSRQSSVSSTNSLNWGDHATAPATASTSNSNPFLASTR
SRTLASSGSPRLAASLTSLSSGGGSTGGGPTRFPRHSPAISLSTSVASPVSSPRSASASS
SQISSLLVTQLNILLSTLKDDSDRGKWTAQADKVRKLVDDSGMDSSIYLRRLLQGSASQI
FPNARAAPAGQDNAGSYQLFSEEMMKIAKEPQQAEKIAQALDTNEGELFRDFDLPQLISH
FKLDALSQIALALACRTALKADLRAKADKHIATTWPLFLQYVSQPQSADPDSDYSPLVLA
TIVERTVLEPPEKLEDEKRDNLFLAIKLRYINHLRTRIPVAVESAMFLDELFASQDSRLA
KVVQRAGPRSTSSIEMCRDMLAGVETRDISYNQVASALLFMVIVQGGDLYDAGIFVDALR
LHRAGAKIDWTDVVQGFDRENLRVTKKQFLALYNALLPLAKEYSNLDIQLMWGGQWQYEE
TQLSFVVAFLATTPEELDVGQIPNLRQCFELTEFATASQSVKDFAEQALRHPLVSRDATQ
ALFSMIFRSQESYSVAQMLGIPDTVINQNMPVFVCAASAIPKPWAPLQDQALKQLLFPFV
LKRHENYDFVMHALWQHDKTWLAGKLVEFYAQELNLLRPIYEHAQEHSWLADLLTLHNHF
AIDLAAYAHGMGHCDLEEWAQQLIAGMNPLEFVRALYSFLKMKMDDENNVQREHLQPTMT
SLTIKTVHTLLLLISENVPDDTIGTLLKQCLQTWPRLFNYGEDDARNEIIETLCQQGHAL
PESATKEMEDRYKLMYSGTTTPDDVVTELNRLKTSEDPNEQDLFAAMLFGLFEEYSCFGE
YPNEALAVTAVLFGGLIARNVLFGIAEQAAIFMMVEAASESTQEDPMYKFGLQALIHCIP
RLKEWPLLAERIFHTPNLRSTQVWTAAEAVVKKMQHENLGMNGDGANGITNGVVDDDFSA
EAAIPAFTAIQVDPPLRESFYEDPNEDISDKVTFVLNNVSKRNLEEKFKEIESALEDKYH
SWFAHYLVEELAKSQPNFQSLYLSVLDKFNQKPLWAEVLRETYMSCQKMINAQSTMDNQH
ERATLKNLAVWLGSITLARNQPILHRNLSFKELLLEGYDTQRQLVAIPFTCKTLVQAAHS
KVFRPPNPWIVEILSILAELYHATDLKLNLKFEIEMLFREFQLEMNEIPMSEAIRSRPLL
DLAMMNYVPDGPDAFGDMALMGLSKRGPNERFSPDAVIQAVPDLGGMLQIPQAVGAITQQ
QMRSIFVNAAQQAIYEIIAPVVERSVTIASISTSELIQKDFNTEGDVDKMRNSAHTMVRA
LSGSLALVTCKEPLRMSITNNIRLLAARSLPEQLPEGQILMFVNDNIDTVCSLVERAAEE
HSLAEINLQLQQAFEDRRQHNEQRPNEPFSQQSVSRWATLIPDPYRQDQNGLNRQQLALY
EEFGRVARLTPAVHANSISQDSSRQLPDVLPENYLPSLQTPAEAPAMPRPTQQRTIGPAV
NGYMDNPNIGQRIMELIEELQQTSREAPEEHISEIGEGAPIRRVYGELVGLIERAPGLDA
LAVNSGMQCLNVVYNTAQKRLEVEVFVRLLTQLCRMSTAAGRNITMQLATADNDHMYNAA
ATVALHNEGLLELQHIDTQIAKGIKSKRHVALPFLKEIVDELLLGDNPMSFRTDFVLTYE
ALSNWLHEEPGLDLGREIMTKLQLPANQVNGMPSPESDSNKIDQHEYIFEEWVRLQRKDL
PDRTHLAFMQQIHNRGVIAHEEEAIKFFRACLDMSCAEYDRISAVPYATLDQAYVHIDAL
AKLIAMMVIFQSTSDGEPQANKAKPFAALIRLVILIMNDHHRRYRERFNGRVYFRLFSTF
LCEVHGYRQQLTIEQSQAIFGEFANALQVLQPRYFPGFMHGWLSLLGHRLFLGHFLDGQG
RTNGGWDTYTRLVHILLVNLGDLLSMSDVPAVVLDYYRGVIRFFLMLHHDFPEFLIENHM
QLDASIPVQCVQLLNIVNSATPRTVYNDQPDPFTPGLKINRLEQVRQAPAVHSTMSNVLD
EAGIRTAIDRICEGGDISEQDFGTIVSAVDRSDGQTSAILVNALVLYVGVHATSASSVFS
SAAAPARLLERLLRESREQARYYLITAMANQVRYINAHTHYFSTALQHMFSIGSPELQEQ
IMRLLCERAVPRPHPWGIIVMLLEMMKNQTYDLWNLPFMKAAPQVEHMLVGLAHRQDHGW
SGVM
NT seq
6855 nt
NT seq
+upstream
nt +downstream
nt
atgagccacccgcaacactcgaacagcggcaacgacgacgcaccggagctctccacgaga
ctccctcccgcacggacatccgagcgaggatctggatctggcttgacgccgattcagagc
cgtccgctcgaccacctccagagccatattcgaccatcaccgcagctcaggacacagctc
tcacccaccgcatccacatctacaccccactacaatatcgctgctgttgccgcgaatcag
cacatccgcagccgacagtcatccgtctcatcgaccaattccttgaactggggagaccac
gcgactgcgccagcaacagcgtcgacatctaacagcaacccattcctcgccagcacacgc
tcgcgaacgctcgcgtcctcaggcagccctcgccttgcggcctcactcacgagcttgtcg
tctggaggtggcagcaccggcggagggccgaccagattcccgcggcattcacctgccatc
tcactctccaccagcgtcgcctcacccgtatcctcaccacgcagcgctagtgcatcatct
tcacagatcagcagtctgctcgtcacccaactgaacatcctcctgagtacgctgaaggac
gactcagaccgagggaagtggacggcgcaggcggacaaggttaggaaactggtcgatgac
agcggcatggattcgagcatatacctccgacgtctgctgcaaggcagcgcgtcgcagatc
ttccccaatgcgcgtgctgcgccagccggacaggacaatgccggaagctaccagctgttc
agtgaggagatgatgaagatagcaaaggagccacagcaagccgaaaaaattgcacaggca
ttggacacgaacgagggcgagctgttccgagactttgacttaccacaactcatcagccac
ttcaagcttgatgcactcagtcagatagcactagcacttgcgtgcaggacggctttgaag
gctgatctaagggcaaaagcggacaaacatatcgcgaccacctggccgctcttcctccaa
tacgtctcgcagccacagtccgccgatcccgattccgactattcacctttagtactggcg
acgattgtcgagcgcaccgtcctcgagccaccggagaagttggaggacgagaagcgcgac
aatctcttcctcgcgatcaaattacgttacatcaatcacctccgtacacgaataccagtc
gccgtcgagtcggccatgttcctcgatgagctcttcgcgtctcaggactcgcgtctggcc
aaagtcgtgcagagagcgggaccacgcagtacgagcagcattgaaatgtgcagagacatg
ctggcgggcgtcgagacgcgtgacatatcatacaaccaggtcgcgagcgccctcctgttc
atggtcatcgttcagggcggagacctctatgatgctggcatcttcgtggatgcactgcga
ctacaccgggcaggagccaagatcgactggacggatgtggtgcaaggtttcgacagagaa
aacctgagggtcacgaagaagcagttcctagcgctgtacaatgcgctgctgccgcttgca
aaagagtacagcaatttggacatccaattgatgtggggaggccaatggcagtatgaggaa
acacaactgagcttcgtggtcgcattcttggccactacaccggaagagttggacgttggt
cagataccgaacctccggcagtgcttcgagctcaccgagtttgcgaccgcatcacagagc
gtcaaggactttgcagagcaggcgctcaggcatcctctggtgtcgcgagacgctacgcag
gcgttgttctccatgatattccgctcgcaggaaagctacagcgtggctcagatgcttggc
ataccggataccgttatcaaccagaacatgcccgtgttcgtctgcgcagcgtcggctatc
cccaaaccatgggcacccctgcaggaccaggcgctcaagcagctcctctttccgttcgta
ctcaagcgacatgagaactacgacttcgtgatgcatgcgctatggcagcacgacaagact
tggttagctggtaaactggtcgagttctacgcgcaggagcttaacttgctacggccgatc
tacgagcacgcccaagagcatagctggctggccgatcttctgacactgcacaaccatttt
gccatcgatctggctgcctacgcgcacggtatgggccactgtgatttggaagagtgggcg
caacaactgatcgctggcatgaatcctctggaattcgtacgagccttgtacagctttctc
aagatgaagatggacgatgaaaacaacgttcagcgtgagcacctacagcctacgatgacc
tcgttaaccatcaagactgtgcacacactgcttttgctcatctcggagaatgtgccggac
gacacgatcgggaccttgctgaaacagtgccttcaaacgtggccgcgactgttcaattat
ggcgaagatgatgcgcgcaacgagatcattgagactctgtgtcagcaaggtcacgcactg
cccgagagcgccacgaaggagatggaagatcgctacaagctcatgtacagtgggactact
actcctgacgacgtcgtgaccgagcttaacagactcaaaacatcagaggacccaaacgag
caagacctgtttgctgctatgctgtttgggttgttcgaagagtacagctgttttggggag
tatcccaacgaggcgctagctgttaccgcggtcttgtttggcggtctcatcgctcggaat
gtgctgttcggcatcgctgagcaagctgccatcttcatgatggtagaagcagcctcagag
tctacccaggaggaccctatgtacaagttcggcttgcaagcactgatccactgcattccg
agactgaaagaatggccgctactcgcggaacggatctttcacactcccaacctccgcagc
acacaagtctggaccgctgctgaggcagttgtcaagaagatgcagcacgaaaatctgggc
atgaacggcgatggcgcgaatggcatcactaatggagttgtcgatgacgacttctctgca
gaagctgccatacctgcgttcacggcgattcaggtcgacccgccgttacgcgagagcttc
tacgaggacccgaacgaagacatctccgacaaggtgactttcgtgctcaacaacgtttcc
aagcgcaacctggaagagaagtttaaggaaatcgaatcagcgctcgaggataagtaccac
tcgtggttcgctcactatctcgtggaggagctcgcgaaatcgcagcccaactttcagtct
ttatatctcagcgtgttggacaaattcaaccagaagccactgtgggcggaagtcctgcga
gagacctacatgagctgtcagaagatgatcaacgcgcagtcaacgatggacaaccagcac
gagcgagcgaccttgaagaatcttgccgtgtggctgggctcaatcaccttggctcggaac
cagccgatactacaccgaaacctatccttcaaagagctgctgctcgaaggatacgacact
cagcgacaactcgtcgctatcccctttacctgcaagaccctcgtccaagcggcgcattcc
aaggtgtttcgaccccctaatccatggattgtggagattctcagcatacttgccgaactt
taccacgccacggacctcaagcttaatttgaagttcgagatcgaaatgttgttccgcgag
tttcagctggagatgaatgagattccgatgtctgaggccatccggtctcggcctctgctc
gatttagcgatgatgaattacgtacccgatggaccagacgcctttggtgacatggcactc
atgggcctctccaagcgtggtcccaacgagcgcttctcgcctgatgcagtaattcaagca
gtccccgatctcggcgggatgctccagattcctcaagctgttggagccatcactcaacag
cagatgcgcagcatattcgttaacgccgcgcagcaagcgatctatgaaatcattgcacct
gtcgtggaacgctcagtcacgatagcttcgatctccacctcagagctgattcagaaggac
ttcaacaccgaaggtgacgtcgacaagatgcggaattctgcccacaccatggtgagggcg
ctctctggcagtttggccttggttacttgcaaagaaccactccgcatgagcatcacaaat
aacatccggcttctagcggcaaggtctctgcctgagcagctgcctgaaggacaaatcctc
atgtttgtgaacgacaacatcgatactgtctgcagtctagtcgagcgtgcggccgaggag
cactcgctggctgagatcaatctccagctccagcaagcctttgaggatcgcagacagcac
aacgagcagcgaccgaacgagccgttctctcagcagtctgtaagtcgctgggcaaccctc
ataccggatccttaccgacaggaccaaaatggtctcaatcgccagcaattggctctttac
gaggaatttggacgcgtcgctagattgacacctgcggtgcacgccaacagcatctcacag
gacagtagtcgccaattgcccgacgtgctacctgagaactatctgccaagcctgcagacc
ccagcagaggctcctgcaatgccacgaccaacacagcaaagaaccattggtcctgccgtc
aatggctacatggacaatcccaacatcggccagcgcatcatggagctcatagaagagctg
cagcagacttccagagaagctccagaggaacacatcagcgagattggagaaggcgcgccg
atccgacgagtgtatggggaacttgtcggcctcatagaacgagctcctggactcgacgct
cttgccgttaactctggcatgcagtgcttgaacgtggtgtacaacactgcacaaaagcgg
ctcgaggttgaagtcttcgtgcgcttgcttacacaattatgccgcatgtccactgcagcc
ggcaggaacataaccatgcagctcgccaccgcagacaatgatcacatgtacaacgcagca
gcaactgtcgcgctgcacaatgagggactgttggagctgcagcacatcgacactcagatt
gccaaggggatcaagtctaagagacatgttgctctgccatttttgaaggaaattgtggat
gagctcctgctcggggacaaccctatgtcattccgcacagacttcgtgcttacttatgaa
gcgctgagcaactggcttcatgaagagccaggtctcgaccttggacgcgaaatcatgacc
aagcttcagcttccagccaaccaggtcaatgggatgccaagtccagagtccgacagcaac
aagatcgaccaacatgagtacatcttcgaagagtgggtgcgcctgcagagaaaggatctg
ccggaccgcacccacctcgctttcatgcagcagattcataatcgaggcgtgatcgcgcac
gaagaggaggccatcaaattcttccgtgcctgcttggacatgtcgtgcgctgagtatgac
aggatcagtgccgtgccatacgccactttggaccaagcttacgttcacatcgatgcgctg
gccaagctgatcgctatgatggtcatcttccagagcaccagcgacggcgagccgcaagcg
aacaaggcgaagccgttcgcagctcttattcgcctggtcatcttgatcatgaacgaccac
cacaggaggtaccgtgaacgcttcaatggcagggtctacttccggctgttctcaacattc
ctgtgcgaggttcatggatatcgccagcagttgaccatcgagcagtcgcaggccatcttt
ggcgagttcgccaacgcgctgcaagtactgcagccaagatacttcccaggctttatgcat
ggttggctgtcgctgctcggacaccgcttgttcctcggccatttcctggacggtcaaggc
cgtaccaacggaggatgggacacatacaccagacttgtgcacatcctgctggtcaacctt
ggagatctgctgtccatgtcagatgttccggctgtcgtgctggattactacagaggtgtg
atccgcttcttcctcatgctgcaccacgacttcccagaattcttgatcgagaaccacatg
caattggatgccagtattcccgtgcaatgtgtgcaactgctcaacatcgtcaacagtgca
acaccgcgcactgtttacaacgatcagccagacccattcacgccaggcctcaagatcaac
agactggaacaagtccgtcaggcaccagccgtacactccaccatgagcaacgtgctggat
gaagcgggcatcagaacagctatcgaccgcatctgcgaaggaggcgatatcagcgagcaa
gacttcggaaccatcgtgtctgccgttgaccgatcagacggccagacgagcgccatcctc
gttaacgcgctcgttctctacgtcggcgtccacgccacgtccgcatcctcggtcttctcc
tccgcagctgcaccagcacgacttctcgaacgacttctacgtgaatctcgcgagcaggct
cgctattacttgatcaccgcgatggccaaccaggtgaggtacatcaacgcccacacacat
tacttctccacagctttacagcacatgttcagcatcggttccccagaactccaggagcag
atcatgcgcctgctgtgcgagcgcgccgtacctcgaccacacccctggggcatcattgtc
atgctcctcgagatgatgaagaaccagacctacgacctctggaacctgccgttcatgaag
gctgcgccgcaggtcgagcacatgcttgtgggacttgctcacaggcaggatcatggatgg
agtggggtgatgtag
DBGET
integrated database retrieval system
