Flavisolibacter ginsenosidimutans: FSB75_12260
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Entry
FSB75_12260 CDS
T06122
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fgg
Flavisolibacter ginsenosidimutans
Pathway
fgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB75_12260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgg03019
]
FSB75_12260
03400 DNA repair and recombination proteins [BR:
fgg03400
]
FSB75_12260
Enzymes [BR:
fgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FSB75_12260
Messenger RNA biogenesis [BR:
fgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSB75_12260
DNA repair and recombination proteins [BR:
fgg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FSB75_12260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
AAA_30
Viral_helicase1
ResIII
AAA_22
PhoH
AAA_12
SLFN-g3_helicase
AAA_11
AAA_16
FtsK_SpoIIIE
DUF2164
Motif
Other DBs
NCBI-ProteinID:
QEC56634
UniProt:
A0A5B8UIX7
LinkDB
All DBs
Position
complement(2977940..2982739)
Genome browser
AA seq
1599 aa
AA seq
DB search
MKTIAFFDLETNSKKNILDIGCVKSDDSTLHNRSVHAFLDFIKGSDFICGHNIHNHDLKH
LHTFLGDTSFGSANAIDTLYLSPLLFPSRPYHRLLKNDKLQKEELNNPLNDSFKARDLFY
DEVVAFQQLDEPLKKIYFNLLHRHKEFSAFFAYLNYSNELLEPDVEQLIRNYFDGSICSH
ANIYDQIVAAPGPLAYTLALIKATERYSITPPWVLHHFPDVNRIMFLLRGKPCVIGCPYC
GEALNPFNALRRYFGFSHFRSYGGAPLQENAVKAAIQNKSLLAVFPTGGGKSITFQVPAL
MAGENTKSLTVIISPLQSLMKDQVDNLERKGITDAVTINGLLDPIERSKAIERVAEGSAS
ILYISPESLRSVTIERLLLGRKIARFVIDEAHCFSSWGQDFRVDYLYIGDFIKSLQKNKG
LEDKIPVSCFTATAKQKVIEDIRLYFKEKLEIELEIFSANASRTNLHYKVFNQDNEAQKY
AEVRRLLETKQCPTIIYVSRTKKAYKLAESLTEDGFNAKPYHGKMAKEEKTENQNAFIEG
SVDIMVATSAFGMGVDKSNVGMVIHYDISDSLENYVQEAGRAGRDEKITAECFVLFNEED
LDKHFILLNQTKLDIKEINQIWKAVKDLTRTRAKVSNSALEIARKAGWDEGVNEIETRVT
TAIAALEDAGYLKRGKNMPRVFANSILSKTAQEAIEKINTSEKFSEKQKEKAIRIVKKLF
SSKSKRLSTDEAAESRIDYISDHLGIVKDEVIQIIQLLRDEKILADAKDLTAFIKKGEAS
NRSLAVVEKFKGLEEFFLATLEDGEATYNLKELNEKASEAGCKDVSPNKVRTIINFWAIK
NWIKRRNLEYSRNHVQIAPSLAKDELKDKMVKRHFLARFIVEYLYQKAINNTAKNDADEI
LIEFSIQELKDAVESSTGLFTVKASNEDVEDSLFYLSRIEAIKIEGGFLVVYNRLTIDRI
EKNNRILYKESDYDKLRTHYQNKVQQIHIVGEYAKKMVENYKEALQFVDDYFRLNYGSFL
NKYFPGSRQDDIKRTLTPAKFQQLFGALSPAQLEIIKDATNQHVVVAAGPGSGKTRVLVH
KLASLLLTEDVKHEQLLMLTFSRAAATEFKKRLLDLIGNAANFIEIKTFHSYCFDLIGRV
GNLDQSDSVLETAIEKIRNGDIEPSRITKTVLVVDEAQDINVHEYRLVETLMEQNEEMRV
LFVGDDDQNIYEFRGSDSKYMQQLITARNAKKYSLVDNYRSKENIVSLANQWAAGLSHRL
KDLPIVAVDRTNGKIKIIENHSTQLIMPVIQSIMETDLTGSTCVLTRTNDEAVQITGLLI
KNGYTAKLIQTNDGFNLSKLAELRYFTDLITTQTDSPVISEDEWEEGKRKLAHAFQRSNK
LDGCQSIIKDFEAINPVKRYKSDWKAFLNESRFEDFVRINGETVYVSTIHKAKGKEFDNV
FLMLDKFDATKEECKRQLYVAVTRAKTNLTIHYNGSFLQNLITADLTYSTDLNVYPPANF
ISCLLTHKDVKLGYFEYVQHRMNGVASGDELTITTEGLSTDKGLAVKFSNEFVMSTEKLH
LKGYHLESAKANFIVHWYNMKDNKEVKIILPELNFSKEK
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaattgcattttttgaccttgagactaattcgaagaagaatattctggatatt
ggttgtgtaaagtcggatgattcgactttacacaacaggtccgtgcacgcttttttagat
tttataaagggcagtgattttatctgtggccataatattcacaaccacgatttgaagcac
ctgcacacctttcttggagacacatcttttggttcagcaaacgctattgatacgctttat
ttatcgccgttgctgtttccttcacgtccctatcaccgcctgttaaaaaatgacaagctg
caaaaagaggaattaaataatcctcttaatgactcttttaaagccagggatttattttac
gatgaagtagttgcctttcaacagttagatgagcctttaaaaaagatatacttcaaccta
ctgcaccgtcataaagaattctcagccttttttgcttacctgaattattcaaacgaacta
ctggagccagacgtagaacaattaatccggaattatttcgatggctctatttgtagccat
gcaaacatatacgaccaaattgttgcggctcccggccctcttgcttataccctggcatta
attaaagcaactgaaagatattccatcacaccgccctgggtgcttcatcattttcctgat
gtaaataggataatgtttctgcttagagggaagccgtgtgttataggctgcccttattgc
ggcgaagctttgaatccattcaatgcattgaggcgctatttcggcttctcccatttccgc
tcgtatggtggcgcacctttgcaagagaatgctgtgaaagcggctattcagaacaaatcc
ttactggcagtttttccaacgggtggtggtaaatcaattacttttcaggtgcctgcatta
atggctggcgagaatacgaaatcgcttacggtaattatctctccccttcaatccttaatg
aaagaccaggtagataatctggaaagaaagggtataacggatgcagttaccattaacgga
ttattggacccgatagaaagaagcaaagctattgaacgggtagccgaaggcagtgcaagc
atcctatatatttcccctgaatccctccgttcagtaacgatagaaagattgttacttggc
aggaagatagctcgctttgtcattgatgaagcccactgtttttcttcatggggacaagac
ttccgggtcgattatttatacataggcgattttataaaatcacttcagaagaacaaagga
cttgaggataaaattcctgtgtcctgcttcactgctacggccaagcaaaaagtgattgaa
gacatccgcctatatttcaaagaaaagttagagattgaattagaaatatttagtgctaat
gcctcccgaaccaatcttcattacaaagttttcaatcaagataatgaggcccagaaatat
gcagaggtccggcggctcctggaaacaaagcaatgcccgacgatcatttatgtttcccgt
accaaaaaggcatacaagttggctgaaagcctgacagaagatggcttcaatgcaaagcct
taccatggcaagatggctaaagaagaaaagacggaaaatcaaaatgcctttattgaagga
agcgtcgatattatggtggctacatcagcttttggaatgggcgtagacaaaagtaatgta
ggcatggtcattcactacgacatttcagattcattggaaaactatgttcaggaggctgga
cgtgcaggtagggatgagaagataactgctgaatgttttgttctttttaatgaagaagat
ctagataaacattttattctgctgaaccaaaccaagctggacattaaagaaattaatcaa
atctggaaggcggtaaaggatttaacaagaacaagggccaaggtttcaaattcagcactg
gagattgcccgaaaagctggttgggatgaaggtgtaaatgaaatagaaacgcgggttacg
accgccattgccgccctggaagatgctggctatttgaagcggggcaagaacatgccaagg
gtgtttgccaacagtatactatcgaaaacagcacaggaggccatagaaaaaataaatacg
tctgaaaaattttctgaaaagcaaaaagaaaaggcaatccgtattgtcaaaaagctcttc
tccagcaaaagcaaacgactgtctactgacgaagctgcagaatcacggatagattacatc
tcggatcacttagggattgtaaaagatgaagtgattcagatcatacaattattaagagat
gagaaaatattagctgatgcaaaagatttgacagcctttataaagaaaggtgaggccagc
aatcgttccctggctgtggtagaaaagttcaagggcctagaggaatttttccttgccacc
ttagaggatggtgaagcaacttacaacctgaaagaattaaacgaaaaagcttctgaagcc
ggatgtaaagatgtgagccccaataaggtcagaacgattattaacttttgggcaattaaa
aattggattaagcgacgaaatctggaatattcccgcaatcatgttcaaatagctccatct
ctcgccaaagatgaattaaaggataaaatggtaaaacgccatttcttagcaagattcatt
gtagaatacttgtatcaaaaggctataaacaatacagcaaagaatgacgccgacgaaata
ctgatagagttttccattcaggagctgaaggatgcagttgaaagcagcactggcttattt
accgtgaaggcgagtaatgaagacgtagaggacagcctcttttacttatcacggattgaa
gccataaaaatagaaggcgggttcttggtagtctataaccgattaacaattgaccgtatt
gaaaaaaataacaggatactttataaagaatctgattatgacaagctaagaacgcattac
cagaataaagtacagcaaatccatattgttggtgagtatgctaaaaagatggtggagaat
tataaggaggctttacagtttgtagatgattatttccggctcaactatggatcctttctc
aataaatattttccaggaagcaggcaggatgatattaaacgtacactaacacctgccaag
ttccagcaattgttcggggcattgtctccggcccaattggagattattaaggatgctacc
aatcagcatgtggttgtagcggcaggtccgggcagtggtaaaacaagagtgcttgtacat
aagttggcatcattacttttaacggaagatgtaaagcatgagcaactcctgatgcttaca
ttttcaagagcagcagccacagaatttaaaaaacggttgctggacctgattggaaatgct
gccaacttcattgagattaagactttccactcgtattgttttgatttgatcggcagggtt
ggcaaccttgatcagtctgattctgttttagaaacagcgattgaaaaaattaggaacggc
gatatcgaacccagcagaattaccaaaacagtgttagtagtagatgaagcacaggatatt
aatgtacatgaatacaggttggtagaaacactcatggagcagaacgaagaaatgcgggta
ttattcgtaggcgatgatgatcagaatatatatgaattccgtggatcggattcgaaatac
atgcagcagctaattacggccaggaatgcgaaaaaatatagcctagtagacaactaccga
agtaaagaaaatatagtgtctttggccaaccagtgggccgccgggctctcgcaccgctta
aaagatttgccaattgtagcggtagatcggactaatgggaaaataaagatcattgaaaat
cattcaacacagcttattatgcctgttattcaaagcataatggaaaccgacttaaccggt
tccacttgtgtgttgaccagaaccaatgatgaagccgtgcaaataaccggactgcttata
aagaatggatatactgcaaagttaatccagacaaacgatggctttaatttgtccaaattg
gcggagcttagatactttactgacctgatcactacgcaaacggattctccggtaataagt
gaagacgaatgggaggaggggaagcgaaaattagcccatgcctttcagcgaagcaataaa
ttagatggctgtcagagtattatcaaagattttgaggctatcaatccggttaaaagatac
aaaagcgattggaaggctttcttgaatgaatcacggtttgaagattttgttcgcatcaat
ggcgaaactgtttatgtctctaccatccacaaagccaaaggcaaagagtttgacaatgtt
tttttgatgctcgataagtttgacgcgacaaaggaggaatgtaagcggcagttgtatgtg
gctgttacgagagccaaaacgaatctcaccatacattacaatggaagttttttgcaaaat
ctgatcacggctgacctcacctattcgactgacttaaatgtttaccctccagcaaacttt
atttcctgtctgttaacacataaggatgtaaagcttggctatttcgaatatgtgcaacat
aggatgaatggagtagccagtggcgatgagttaacgattactactgagggactatcgact
gataagggtttggcagttaaattttccaacgaatttgttatgtcaacagagaagttacat
ttaaaaggctatcatttagaaagcgctaaagcaaacttcattgttcattggtataacatg
aaagacaataaagaagtaaaaattattttaccggaattgaatttttccaaagagaagtga
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integrated database retrieval system
