Fimbriimonas ginsengisoli: OP10G_3859
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Entry
OP10G_3859 CDS
T03038
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fgi
Fimbriimonas ginsengisoli
Pathway
fgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OP10G_3859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgi03019
]
OP10G_3859
03400 DNA repair and recombination proteins [BR:
fgi03400
]
OP10G_3859
Enzymes [BR:
fgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OP10G_3859
Messenger RNA biogenesis [BR:
fgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OP10G_3859
DNA repair and recombination proteins [BR:
fgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OP10G_3859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
MarR_2
ResIII
HTH_Crp_2
TrmB
WHD_E2F_TDP
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIE87227
UniProt:
A0A068NV33
LinkDB
All DBs
Position
complement(4240472..4242397)
Genome browser
AA seq
641 aa
AA seq
DB search
MPTTTDTLGELLQQHFGFAEFRPGQHEAMRALLDEGAALAVFPTGGGKSLCYQLPALAVD
GITLVVSPLIALMKDQIDFLQRRGIPAARLDSSLSSDEVRAINDRLRAGELRLLYVAPER
FNNERFLGDLKRLKIAIFAVDEAHCISEWGHNFRPDYLKLAQMARDIGAERVLALTATAT
PKVVQDICDGFGIKPSGVVLTGFYRPNLTLLTTPCTPAERTPLLVQRLRERAPGSTIVYV
TLQRTAEAVANFLKQHGFAAEAYHAGMNAEDRTKVQDWWMADPARIVVATIAFGMGIDKS
DVRYVYHANLPKSLESYSQEIGRAGRDGVPSIVEMLAAAADLPALENFVYGDTPSEQSVR
SLVHDLLTQPEEFALSTYEFSNRHDIRQLVLRTALTYLELLGALRRGTPFYAGYEFRPLT
RIDDIGDAFPGEHGRFATSLFGAAKRGRIWYGLDPEKAAESLGVERRRVVKALEVMSERG
LIELRASDVRDRYTRLTDLADEDRLVAELVGRFEHRERQEIERLAMVPALVEHEGCQVQS
LVGYFGEVLPKPCGHCTYCLTGKAQAIPALPPAATITSLVTPRDLAELTANNPGELATPR
QLARFLCGLTSPVFTKSKLSRHPLFGVLDEHPFLDVVAAVT
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccaccaccgatacgctgggtgagctgcttcaacagcacttcggatttgccgaa
ttccggccaggccaacatgaggccatgcgcgcgctgctcgacgaaggcgcggccctagcc
gtctttcccaccggcggcgggaaatcgctctgctaccagcttcccgccctcgccgtcgac
ggcatcaccctggtggtttcgcccctcatcgcgctcatgaaagatcagatcgactttctc
cagcgccgcgggatccctgcggcacggctcgattccagcctctcttccgacgaggtgcgt
gcgatcaacgaccggctccgcgcgggggaactgcggctcctctacgtcgcaccggagcgg
ttcaacaacgagcgttttctcggggatctcaaacggctcaaaatcgccattttcgccgtc
gacgaggcgcactgcatctcggagtgggggcataacttccggccggattacctaaagctc
gcccaaatggctcgcgacatcggagccgagcgagtcctcgccctcaccgccaccgcgacc
cccaaggttgttcaggacatttgcgacggcttcggcatcaagccgagtggcgtcgtgctc
accggtttctaccgtcccaacctgaccctgcttaccaccccctgtactccggccgaacgg
acccccctcctcgttcagcggctgcgggaacgggcgccgggctccactatcgtctacgtc
acgctgcaacgcacggcggaggcggtcgcaaatttcctcaagcagcacgggttcgcggcc
gaggcatatcacgccgggatgaacgccgaggaccgcacgaaggtgcaggattggtggatg
gcagatccggcccggatcgtcgtcgcgacgatcgcctttgggatggggatcgataaatcc
gacgtgcgatacgtctatcacgcgaacctgccgaagagcctggagagctacagtcaggag
atcgggcgcgccgggcgcgacggagttccatccattgtggaaatgctcgccgccgccgcg
gacctgcccgccctcgaaaacttcgtttacggcgatacgccgagcgagcaatcggtgcgg
tcgctcgttcacgacctgcttactcagcccgaagaattcgccctttcgacatatgagttt
tcgaaccggcacgacatccgccagctggttctacgaaccgcgctcacgtacctggagcta
ctcggggcgttacggcgagggactccgttctacgccggctacgagtttcgtcctctcacc
cggatcgacgacatcggcgacgcctttcccggcgagcacgggcgtttcgcgacttccctc
tttggagccgccaagcggggacggatttggtacggactcgaccccgagaaagcggcggaa
tcactcggcgttgagcgaaggcgagttgtgaaagcgctcgaggtgatgtcggagcgtgga
cttatcgaactccgcgccagtgacgttcgcgaccggtacacccgattgaccgatctcgcc
gacgaagatcgcctcgtcgccgagttggttggaagattcgaacaccgggaacgccaagag
atcgaacgcctggcgatggttcccgctctggtcgaacacgaggggtgccaagtccaatcg
ctggtgggctacttcggcgaagtgctgccaaaaccgtgcgggcactgcacgtattgcctg
accggaaaagcccaagcaattccggctctccctccggccgcgacgataacgtcgctggtt
actccacgcgacctcgcggagctcaccgcaaacaatccgggcgagctggcgactccccgc
caactcgcccgtttcctttgcggccttaccagcccggtcttcaccaaatcgaagctaagc
cgccacccgctcttcggggtgctggatgagcacccgttcctggatgtcgtcgccgccgta
acctag
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