Fibrella sp. ES10-3-2-2: A6C57_03695
Help
Entry
A6C57_03695 CDS
T04805
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fib
Fibrella sp. ES10-3-2-2
Pathway
fib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A6C57_03695 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fib03021
]
A6C57_03695 (rpoB)
03400 DNA repair and recombination proteins [BR:
fib03400
]
A6C57_03695 (rpoB)
Enzymes [BR:
fib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A6C57_03695 (rpoB)
Transcription machinery [BR:
fib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A6C57_03695 (rpoB)
DNA repair and recombination proteins [BR:
fib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A6C57_03695 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ARK09509
LinkDB
All DBs
Position
complement(862143..866012)
Genome browser
AA seq
1289 aa
AA seq
DB search
MATNAKNTNTRKNFATIQPVLEYPDFLDIQLKSFRDFFQLDTPSDSRSQEGLYKVFQENF
PISDSRENFKLEFIDYSVDPPKYSVDECIDRGLTYSVPLKAKLRLSNSDPDNEDFETIEQ
EVFLGNIPYMTAKASFVINGAERVIVSQLHRSPGVFFSMSKHTNGTKLYSARIIPFKGSW
IEFSTDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEEINATPASLKKAIG
RRLAARVLRTWTEDFVDEDTGEVVSISRNEVLLERDSVIGAEDIDTITESGQKSVILHKE
DMNVADYNIIYNTLQKDSSNSEKEAVEQIYRQLRNTEAPDEQSAREVIQSLFFSDKRYDL
GDVGRYRINKKLGLEVALDTKVLTTQDIVSIVKYLIGLINAKAVVDDIDHLSNRRVRTVG
EQLYAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQ
TNPLAEVTHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCV
FAKVNSMGFIETPYRIVENGKVPDKPVMYLTAEEEDTHYIAQASSALDAKGNFKVDRLKA
RFEGDFPISEPSSVSFMDIAPNQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPLLRPE
APIVGTGLEGRVAVDSRALVIAETDGVIDFVDSTKIVVRYNLDKDTGLVTFDEDIKTYNL
IKFRRTNQDTCINLKPVVLKNQKVKKGDVLCEGYATQKGELALGRNMKVAFMPWQGYNFE
DAIVISERVVREDIFTSIHIEEFELEVRDTKRGEEELTSEIPNVSEETVRNLDENGIVRV
GTEVKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSLKGVVIDTKL
FSRPSKEDRGKHKEELKVLMKKYGRDLVAFRTRGIDKLVELLDGKTSQGVKHRFGDEIIS
KGTKFNRKNITDNLFPDKNPYRDESGYSVPEEVNLMADLVLENWTEDEATNALLVKLVKN
YNTRRNEISGRFKRERFTLEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVA
RIVRDEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLAWAGQKLNRKYATPIFDGAT
EQQVSDELTEAGLPEFGRTYLYNGLSGERFDQKVTVGIIYMLKLGHLVDDKMHARSIGPY
SLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILQEILTVKSDDVVGRAKAYEAIVKG
ENMPKPNIPESFNVLVHELRGLALEITLE
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttggctacaaacgctaaaaacaccaacacacgcaagaactttgcgacgattcagccagta
cttgaataccctgactttctggatattcaactgaaatcattccgcgactttttccagttg
gatactccttcagacagccgttcgcaggaaggactgtacaaggtatttcaggaaaatttc
ccgatctctgactcccgcgagaatttcaagctggaatttatcgattattctgttgatccc
ccaaaatattcggtcgatgagtgtatcgatcggggattgacttactcagtgcccctcaaa
gctaagcttcgtctgtcgaacagtgatcccgataacgaggattttgagacaatcgagcag
gaagtattcttgggtaacatcccttatatgactgcaaaagcgtcgtttgtgataaacgga
gctgaacgtgtcattgtttcgcagttacaccggtcaccaggtgtgttcttctcaatgagc
aaacacactaacggaacgaagctgtattccgctcggatcattccgtttaagggctcatgg
atagagttctcgacggacgttaataatgtcatgtacgcctatattgaccggaagaagaaa
ttcccggttacgacgctgttacgggcaatcggttttggctctgacaaagacattctggat
ctgttcggtctgtcagaagagataaatgcaacaccggccagcttgaaaaaggcaattggt
cgtcggttagcagcacgggtgctacgtacctggacagaagacttcgttgatgaggatacc
ggtgaggtagtttcgatcagccgtaacgaagtgttgctggagcgggactcggtaattggc
gctgaagatattgatacgattacagagtcaggtcagaaatcagtcatcctgcacaaggaa
gatatgaatgtggctgattacaatatcatttataacacacttcagaaagacagttcaaac
tctgagaaagaagccgtagagcaaatctatcgccagcttcggaatacagaggcacctgat
gaacagtcggcccgtgaagtcattcaaagtctgttcttctctgataaacggtatgacctc
ggcgacgtaggccggtaccggattaacaagaagctgggtcttgaagtagcacttgatacg
aaggtactgactactcaggatatcgtgtcgattgtgaagtacctgatcggtttgatcaat
gcgaaagcggttgtcgatgatattgaccacttgagcaaccgccgggtacgtaccgtaggt
gagcagttatacgcccagtttggtgttggtctggctcgtatggcccgaactattaaagag
cggatgaacgtacgagataacgaagacttcaaaccggttgatctgatcaatgcgcgtacg
ctgtcttcggtgatcaactcgttcttcggtacaaaccagttatcgcagtttatggaccag
acgaatccgctggccgaagtgacgcacaagcgtcgcatgtcggcactcgggccaggtggt
ctgtcgcgggaacgggcaggttttgaagtacgtgacgtacactacacccactacggtcgg
ttgtgtacgatcgagacgcctgaaggaccaaacatcggtctgatttcgtcgctttgcgta
tttgcgaaagtaaacagcatgggcttcatcgaaacgccgtaccggattgtagaaaacggt
aaggtacctgataagccagtgatgtacctgacggctgaagaagaagatacccattacatt
gcgcaggctagctcggcgcttgatgcgaaggggaattttaaagtagaccgattgaaagcg
cgtttcgaaggtgacttcccaatttcggagccatcgagcgtgtcattcatggatattgcg
cctaaccagattgtatcggtggctgcgtcgatgattccgttcctagaacatgatgatgct
aaccgggccctgatgggatcgaacatgcaacgtcaggctgtaccacttctccgtccggag
gccccaatcgtgggcactggtctggaaggacgtgtcgccgttgactcgcgtgcattggtt
attgcagaaacggatggtgtaattgactttgttgactcaaccaaaattgtagttcgatac
aatctggataaagacacgggtctggttacgttcgatgaagacatcaaaacgtataacctg
atcaagttccgccggactaaccaggatacctgcatcaacctaaagcctgttgtgttgaaa
aaccagaaggtgaagaaaggtgatgtgctttgcgaaggctacgctacgcagaaaggagaa
ctggcgctgggtcgtaacatgaaggttgccttcatgccatggcagggatataacttcgag
gatgctatcgtaatttctgagcgtgttgtgcgcgaagacatctttacgtcgatccacatt
gaggagtttgaactggaggtacgtgatacgaagcggggtgaagaggaattaacctcagaa
attccaaacgtttcggaggaaaccgttcgtaacctggatgagaacggtatcgtccgcgta
ggtactgaagtgaaagaaggcgatatccttattggtaagattacaccgaaaggcgagagc
gatccgacaccggaagagaaactactccgtgccatcttcggtgacaaagccggtgatgtg
aaggatgcctctaaaaaggcaccaccttcattgaaaggcgttgttatcgataccaaattg
ttctcacgtccgtcgaaagaagaccgtggcaagcataaggaggaattgaaggtgctgatg
aagaagtatggtcgtgacctggttgcgttccgtactcgcggcatcgacaagttggtcgaa
ctgctggatggcaaaaccagccagggcgttaagcaccggtttggtgatgagatcatcagc
aagggcacgaagttcaaccggaaaaatattacggataacctgttcccggacaaaaaccca
tatcgcgacgaaagtggctattcggtaccggaagaggtgaacctgatggctgacctggtg
ttggagaactggaccgaagacgaagcaaccaacgcgttgctggtgaaactggttaagaac
tacaacacacgccggaacgaaatctcaggccgtttcaagcgggagcgtttcaccctcgaa
gtaggtgatgagctgccagcgggtatcgttaaactggccaaagtctatatcgccaagaag
cgtaagctgaaagtaggtgataagatggctggtcgtcacggaaacaagggggtagtagcc
cgtatcgttcgtgatgaagacatgccattccttgaagacggtacgcctgttgatatcgtt
ctgaacccactgggtgtaccatcccggatgaacattggtcagatctatgaaacagtattg
gcctgggctggtcagaagctgaaccggaagtacgcaacgccaatcttcgacggggcaacg
gagcagcaggtatctgacgaactgacagaggcagggttgcccgagtttggccggacgtac
ctgtacaacggtctgtcgggtgagcgttttgatcagaaagtgacagtgggtatcatctac
atgttgaaactcggtcaccttgttgacgacaagatgcacgcccgttcgatcggaccctac
tcgcttattacgcagcagccgctgggtggtaaagcacagttcggcggtcagcggtttggc
gagatggaagtgtgggcgttggaagctttcggagcatcgaacatcctgcaagaaatcctg
actgttaaatcagatgacgtagtaggccgtgcaaaagcatatgaggctattgtaaaaggc
gagaacatgccaaagccgaatattccagaatcattcaacgtactcgttcacgagttgcgc
ggtctggcacttgaaattactttagagtaa
DBGET
integrated database retrieval system
