Fibrella sp. ES10-3-2-2: A6C57_07880
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Entry
A6C57_07880 CDS
T04805
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fib
Fibrella sp. ES10-3-2-2
Pathway
fib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6C57_07880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fib03019
]
A6C57_07880
03400 DNA repair and recombination proteins [BR:
fib03400
]
A6C57_07880
Enzymes [BR:
fib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A6C57_07880
Messenger RNA biogenesis [BR:
fib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6C57_07880
DNA repair and recombination proteins [BR:
fib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A6C57_07880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
HemN_C
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ARK13552
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All DBs
Position
1910335..1912206
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AA seq
623 aa
AA seq
DB search
MQEDIVNALLDGHDALVLMPTGGGKSICFQVPALGMDGVCIVVTPLIALMKDQVFQLRRR
GIPAAAIHSGMHYREIDTILDNCIYGNLKFLYVSPERLRTEIMIERARQMTVCLLAVDEA
HCISAWGHDFRPPYLQIAEFRDKLSEEGTGTIPTVALTASATPDVQREIVDKLDFRAGYQ
VFRQTFARANLSYSAMLEEGKEARLLKILTNVPGTGIVYVRSRRQTQYIADWLVRQGISA
DFYHAGLSTPERSQKQEDWINNHTRVIVSTNAFGMGIDKPDVRVVIHLDPPDTLEAYYQE
AGRAGRDGQKAYAVLLYTEADCEHVLFQTEQQYPSVDLIRRTYQALANYTKVPVGSGEFA
TFDFDLAQFTKTYSLPPQDTHYALKQLQMAGYIDLSEAYFRPSRVVINMDNRAIYEFQVM
NPRFDPFIKLLLRMYGGELFTDFLPISEGNLSRAFMVSENEIIQLLTQLAEREVIIYEKQ
TDKPQLTYLTPRQDARQLPFDVQGLEKRRQHAIAKAQASVDYARHQTQCRTRLLQNYFGE
QTDAACGVCDNCLKAKKKAGPDPQVREQVRQYVTLSQDRGVSPRQLSGYFSKTDENDLTL
TVRLMLAEEELRYNAAGNLTMNR
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggaagacattgtgaatgccttacttgatggacatgacgcgctggtactgatgcct
acgggtggtggtaaatcgatctgttttcaggtgcctgccctgggtatggatggggtctgt
attgtggttacccccctcattgccctcatgaaggaccaggtgtttcagcttcggcggcgc
ggcattccggcggcggcgatccactcgggcatgcattatcgcgaaatcgacactattctc
gataactgcatttacggaaatctgaagtttttgtatgtctcgcccgagcgattacgtacc
gaaattatgattgaacgggccaggcaaatgaccgtttgcctgcttgccgtcgacgaggcg
cactgtatttcggcttgggggcatgactttcgtcccccctatttacagatcgctgagttt
agggataagctctctgaagagggtacagggaccattcctactgtagccctgacagcctcg
gccacaccggatgtgcaacgggagattgtggacaaactggatttcagagccggctatcag
gtatttcggcaaacatttgcgcgcgccaacctgtcttactcagccatgctggaagaaggt
aaagaagcccgtctgctgaagatcctgactaacgtacccggcactggcatcgtatacgtt
cgcagccggcgacaaacgcagtacatcgccgattggttggtgaggcaggggatatctgcc
gatttctatcatgcaggcctcagcacgcccgaacgctcacaaaaacaggaagactggatc
aacaaccacacccgcgttattgtctcgaccaacgccttcggaatgggaatcgataagccc
gacgtgcgtgttgtgatccacctcgacccgcccgataccctggaagcgtactaccaggaa
gcaggccgcgccggacgagacgggcagaaagcgtacgctgttttgctctataccgaagcc
gattgcgaacatgttctgttccaaactgaacagcagtacccgtctgtcgacctcattcga
cgtacctatcaggcattggccaactacacgaaggtacctgtaggcagtggtgaattcgcc
acgtttgatttcgacctggctcagttcaccaaaacgtattcactacccccgcaagacacg
cactatgccctgaagcagctgcaaatggcaggttatatcgatctgagtgaagcctatttc
cgtccatctcgggtggtgatcaacatggataaccgggctatctatgagttccaggtcatg
aatccccgtttcgatccatttatcaagctattgctgcgtatgtatggtggtgaactcttc
accgacttcctgcccatttcggaggggaacctgtcacgagcgttcatggtctcagaaaac
gagattatccaattgctgacgcagttggccgagcgagaggtgatcatttacgaaaaacag
actgacaagccccagctaacgtacctgaccccccggcaagatgcccggcagcttccgttt
gatgtgcaggggctagaaaaacggcgtcagcatgctatagctaaagcccaggcctctgtc
gactacgcccggcaccaaacccaatgccggacccgtctcctgcaaaactattttggcgaa
cagacagacgcagcctgtggcgtgtgtgacaactgcctgaaagcaaagaaaaaagcaggg
cccgacccacaggtacgtgagcaggtacgtcagtacgtgaccttatcacaagacagaggc
gtgtcaccccggcaattgtctggttacttcagcaaaaccgacgaaaacgacctgactcta
actgtgcgtctgatgctcgccgaggaagagctacgctacaatgctgccggcaacttgaca
atgaaccggtga
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