Candidatus Filomicrobium marinum W: BN1229_v1_1298
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Entry
BN1229_v1_1298 CDS
T03856
Symbol
gyrB
Name
(GenBank) DNA gyrase, subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
fil
Candidatus Filomicrobium marinum W
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fil03032
]
BN1229_v1_1298 (gyrB)
03400 DNA repair and recombination proteins [BR:
fil03400
]
BN1229_v1_1298 (gyrB)
Enzymes [BR:
fil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
BN1229_v1_1298 (gyrB)
DNA replication proteins [BR:
fil03032
]
Prokaryotic type
DNA Topoisomerases
BN1229_v1_1298 (gyrB)
DNA repair and recombination proteins [BR:
fil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BN1229_v1_1298 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CFX12940
UniProt:
A0A0D6JCU5
LinkDB
All DBs
Position
1:1218843..1221287
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AA seq
814 aa
AA seq
DB search
MSSMPAENTPIAEDYGADSIKMLKGLEAVRKRPGMYIGDTDDGSGLHHMIYEAVDNAVDE
VLAGHASMCNVTLNADGSATVRDDGRGIPVGIKDDDDHEPKRSAVEIVFTELHAGGKFDQ
NSYKVSGGLHGVGVSVVNALSTWLRCRVWRNGKEHFIEFNDGVPVAPLEIVGDANGEQGT
EVSFLPSPNTFTKVEFDFNTLEHRLRELAFLNSGAKIVLEDRRHADVRRVELMYEGGTSA
FVKYLDRSKTALLPEPIMIRAERDGVTVDAALWWNESYHENVLCFTNNIPQRDGGTHLAG
FRGALTRVVNRYAEESGIAKKERVSMTGDDAREGLTCILSVKVPDPKFSSQTKDKLVSSE
VRPIVESAVSEELATWFEEHPKEARSIVSKVAEAAAAREAARKARELTRRKGALDMANLP
GKLAECQDRNAANTEMFIVEGDSAGGSAKQARNREYQAVLPIRGKILNVERARFDKMLSS
QEIGTLITAMGTGIGREEFNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIER
GHLYIAQPPLYKVMRGKSETYLKDHRGLEDYLINNGLEETVLIDGSSNERAGADLRAIVE
EARRTAKCLDDLHSRYARFVVEQATIAGAFDPALLDDPARAAEIANELARRLDTLADETE
KGWEGSFTDDGYLVTREVRGVTEAHALDMGLLRSLDARRLNEHYAQLREVYSAPAKLRRK
SGTIDIFGPRDLLEAVFESGRKGISMQRYKGLGEMNADQLAETTLDRETRTLLQVKIGEL
DEADEIFSKLMGDVVEPRRAFIQENALLVGNLDV
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgatgcccgccgaaaacacccctattgctgaagactacggcgccgattccatc
aagatgttgaaggggttggaggctgttcgcaagcgtccgggaatgtacatcggtgatact
gatgacggctccggcttgcaccacatgatttacgaggctgtcgacaacgctgtcgacgag
gtgctcgctgggcacgcctctatgtgcaacgttactttgaatgcggatggatctgcgacc
gtacgggacgacgggcgcgggattccagtcggcatcaaggacgacgatgatcacgagccg
aagcgctctgccgtcgagatcgttttcacagagctgcatgcgggcggcaagttcgaccag
aattcctacaaggtgtccggcggtctccacggtgttggcgtgtctgtcgtcaacgctcta
tcgacgtggctgagatgtcgcgtgtggcgcaacggtaaagaacacttcatcgagttcaat
gatggtgttcctgtagcgccgctggaaatcgtgggtgatgcgaacggtgaacaggggact
gaagtctcgtttttgccttccccgaatacgttcacgaaggtcgagtttgacttcaacacg
cttgagcatcgcctgcgcgagctggccttcctcaactccggtgctaagattgttctggaa
gaccggcgccatgcggatgttcgccgcgttgagctgatgtacgaaggcgggaccagcgcg
ttcgtcaaatatctggatcgcagcaagacggcgctcctacccgagcctatcatgatccgg
gcggagcgcgacggtgttacggtggacgccgcgctgtggtggaacgagagctaccacgag
aacgtactctgcttcacgaacaacattccgcaacgtgatggcggcacccaccttgcgggc
ttccgcggcgcactgacacgcgtcgtcaaccgctatgccgaagaaagcggaatcgcgaag
aaagagcgcgtctccatgaccggcgacgacgcgcgcgaagggttgacctgcatcttgtcc
gtcaaggtgcccgatccaaagttctcaagccaaacgaaggataagctggtttcctccgaa
gtgcgtccgatcgtagaaagcgccgtgtcggaagaactcgctacatggtttgaagagcat
cccaaggaagctcggagtatcgtttcgaaagtcgccgaggctgcagcggcacgtgaagcc
gcccgaaaagcgcgcgaactgactcgccggaaaggcgctttggacatggcgaatttgccg
ggcaagctcgccgaatgtcaggatcgcaacgcggcaaacaccgagatgttcatcgtcgag
ggtgactcggctggtggttccgcaaaacaagcgcggaatcgcgaatatcaggccgtgctg
ccaatccgaggtaagatcctcaacgttgagcgcgcgcgctttgacaagatgctgtcatcg
caagaaatcggtacgctgatcacagcaatggggaccggcatcggccgcgaggagttcaac
ctcgacaagctgcgctatcacaagatcatcatcatgacggacgccgacgtcgatggcgcg
cacatccgcacgctcttgttgacgttcttctatcgtcaaatgccagagcttattgagaga
gggcatctctacattgcccagccccccctttacaaagtgatgcgcggcaagtcggagaca
tatctgaaggatcatcgcggtcttgaagattacctgatcaacaatggtctcgaagaaacg
gtactcatcgacggttccagcaatgaacgggctggagcagacctgcgcgccattgtcgaa
gaggcgcgtcggaccgcaaaatgcctagatgatctgcattcacgctatgcccgattcgtg
gtcgagcaagcgacgattgctggtgccttcgatcctgctttgctggacgaccctgcccga
gccgctgagatcgcaaacgagctggcgcgccgtctcgatacgctggccgacgagacggaa
aagggctgggaaggcagtttcaccgatgacggatatctagtgacgcgggaagttcgcggc
gtgaccgaggcgcacgccctcgacatggggctgctacgctcgctcgatgcccggaggctg
aacgaacactatgcgcaattgcgcgaagtctattctgcaccggccaaactgcgtcgcaag
tccggtacgatcgacattttcggaccacgcgatctgctcgaagcggtctttgaaagcggg
cgcaagggcatctcgatgcagcggtacaaaggtcttggcgaaatgaacgccgaccagctc
gcggagacgacgctggatcgcgaaacacgcacactgcttcaggtgaagatcggcgaattg
gatgaggccgatgagatcttctcgaagctgatgggggatgtggtcgaaccgcgtcgcgcg
tttattcaggaaaacgcgctactggtcggcaatctcgacgtttaa
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