Candidatus Filomicrobium marinum W: BN1229_v1_3900
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Entry
BN1229_v1_3900 CDS
T03856
Symbol
rnhB
Name
(GenBank) ribonuclease HII, degrades RNA of DNA-RNA hybrids
KO
K03470
ribonuclease HII [EC:
3.1.26.4
]
Organism
fil
Candidatus Filomicrobium marinum W
Pathway
fil03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
fil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1229_v1_3900 (rnhB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fil03032
]
BN1229_v1_3900 (rnhB)
Enzymes [BR:
fil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.4 ribonuclease H
BN1229_v1_3900 (rnhB)
DNA replication proteins [BR:
fil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
RNase H
BN1229_v1_3900 (rnhB)
Elongation factors (archaeal)
BN1229_v1_3900 (rnhB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_HII
Motif
Other DBs
NCBI-ProteinID:
CFX61297
UniProt:
A0A0D6JKJ1
LinkDB
All DBs
Position
1:complement(3796213..3796896)
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AA seq
227 aa
AA seq
DB search
MKIRDSRLLPTFELESAEMALIPGPIAGIDEAGRGPWAGPVVAAAVILDPDNIPDGITDS
KALDENGRETVYARIVATSSFAVGIADVARIDTDNILNATMWAMSHAVSQLEIAPRLALI
DGNRAPKIKCATRTIVRGDAKCLSIAAASIIAKVTRDRIMRKLARDYPAYGFERHKGYGT
PEHREALSRHGVTPLHRRSFRPVQYALGLIADPDNNATRATAEADLI
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcgcgattcacgcctgctgccgacattcgagctggagagcgccgaaatggct
ctcattccgggacctattgccggcattgatgaagctggtcgcggaccttgggcaggtccg
gtggtagcggctgccgtgattctcgaccccgacaacatcccggacggaattaccgattcc
aaagctctcgacgagaacgggcgcgaaacggtctacgcgcggatcgtagccacaagcagt
tttgcggtaggcatcgcagacgtcgcacgcatcgacacagacaacatcctcaacgccacg
atgtgggctatgagccatgctgtatcccaattagaaatcgccccaaggttggctctgatt
gacggcaaccgcgccccgaaaatcaagtgcgccacacgcaccatcgtccgtggtgacgcg
aaatgtctttcgatcgcagcagcttcgatcatcgccaaggtcacgcgcgacaggatcatg
cgtaagctcgcacgcgactatccagcctatgggtttgaacgccacaagggttatggcacc
cccgagcaccgtgaagctctgagccgtcacggcgtcacacccctgcatcgtcgctcattc
agacccgtgcaatacgcactgggcctcatcgccgatccagataacaacgcgacccgtgcc
acagcggaagccgacctgatttaa
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