Fischerella sp. NIES-3754: FIS3754_02090
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Entry
FIS3754_02090 CDS
T04195
Name
(GenBank) ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fis
Fischerella sp. NIES-3754
Pathway
fis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIS3754_02090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fis03019
]
FIS3754_02090
03009 Ribosome biogenesis [BR:
fis03009
]
FIS3754_02090
Enzymes [BR:
fis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FIS3754_02090
Messenger RNA biogenesis [BR:
fis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FIS3754_02090
Ribosome biogenesis [BR:
fis03009
]
Prokaryotic type
rRNA processing factors
FIS3754_02090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
BAU04322
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All DBs
Position
complement(235402..237441)
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AA seq
679 aa
AA seq
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MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLRLKRTAAAITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVV
LMPYGRGVNLSRRIKNENERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIIEDLENLQK
QWEAIQQEAVSTRAPALLNRDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSG
GQVPQGLLIDHHRDRTAILEYFRINAAIKEALKPRVDLPSGGYIIIQPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMETRRDQQHVLEHFNKAL
KADKARPQIAQLTELGLVELTRKRQGQNIYELFSEPCQTCGGLGHIVHLPGETESRSIAS
PAELPERFVSLPQREPRLPSPRLSEPRESYEGFGEAYEHDSDLGGLNLSNHPSYQEISDS
KRRRRRRIGLNGGNGKEEPRINGNPLSLVNEPDMDIDADRDLVEPSDLPIPNINKSGWVE
RGERAKVSRPEIVKPVVEPPEIVTVEMTPPEQDVYALMGVSPLVKLNREVRNPKSVIINV
TLPGQAATMPPETTPEVIAQTATSTIEAPVQTESSPPVTTETPDLPMMADETEATTSTAI
RRRRRRSSALETDSSTGQS
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattattatcgcggagcagcatcaaatagctgccgtattttctgaagat
caaatacaagaattagttgttgctacaggtcatcaccagattggtgatatctacttagga
gtggtggaaaatgtactacctggaatagatgccgctttcgtaaatatcggcgacccagaa
cgcaacgggtttattcacgttacagacttaggcccattacggctgaagcgtacagcagca
gccatcacggaattactagcaccacaacaaaaagtattagtgcaagtaatgaaggagcca
acagggacaaaggggccaaggcttacaggtaacattaccttacccggacgttacgtcgta
ctcatgccctacggacggggtgtaaatttatcccgccgaatcaaaaatgaaaatgagcgt
aaccgcttacgggcattagcaattttaattaaacctgcggggatgggtttgttggttcgc
accgaagcagaaggcaaaccagaagaagcaatcattgaggatttagaaaacctacaaaaa
caatgggaagctattcagcaagaagcagtttctacccgcgcccctgcactgctcaaccgg
gatgatgactttatccagcgtgtattgcgagatatgtacggtgcggatgtcaaccgcata
gtcgtagactccagtactggcttaaaacgggtgaagcagtatttgcaaaactggagtggt
ggacaagtaccacaaggattgttaatcgaccaccaccgcgatcgcacagcaattttagaa
tacttccggatcaacgcagcgatcaaagaagccctgaaacccagagtagacctcccttct
ggtggctacattatcatccagcccaccgaagcattaacagtgatcgatgtcaactctggt
tcatttacgcgatcagcaacagctagggaaacagtgttgtggacaaactgcgaagctgct
acagaaatagcccgccagctacgtttacggaatattgctggtgtgatcgtcgttgatttc
attgatatggaaacacgacgtgaccaacagcacgtcctggaacactttaacaaagccctg
aaagcagacaaagcccgtcctcagattgctcaattaacggaacttggtctagtagaactc
acccgcaaacgtcaaggtcaaaacatttacgaattgtttagcgaaccttgtcaaacctgt
ggtggtttagggcatattgtgcatttacccggagaaacagaaagccgttccatcgcatca
ccagctgaattaccagaacgctttgtatctttgcctcaaagagaaccccgtttaccatct
cctcgtttgagtgaaccacgagaaagttacgaaggattcggggaagcatacgaacacgat
agcgatttaggtggattgaatcttagcaaccatcccagctatcaagaaattagtgatagc
aaaaggcgtcgtcgtcgtcgcattggtctaaatggtggcaacggtaaagaagaaccacgc
atcaatggcaacccgttatcactggtgaatgagccagatatggacattgatgcagacaga
gacttagtagagccttctgatctacctatacctaatattaataaatcaggttgggtggaa
agaggagaacgagctaaagtctcaagaccagagatagtcaaaccagtggtagaaccaccg
gagattgtcaccgtggaaatgacaccaccggaacaagatgtgtatgctttgatgggagtt
tcaccattagtgaagttgaaccgggaagtgagaaatcccaagtctgtgattattaacgtc
actctgcctggtcaagctgctactatgcccccagaaacaaccccggaagtaattgctcaa
acggcaactagtaccatagaggctccggtacaaacagaatcatcaccaccagtaacgaca
gagacacctgacttgcctatgatggcagatgaaacagaagctactaccagtactgctatc
cgtcgtcgtcgccgtcgttcttctgctttggagacagattcatcaacagggcaaagctaa
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