Candidatus Filomicrobium marinum Y: BN1229_v1_0186
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Entry
BN1229_v1_0186 CDS
T03857
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fiy
Candidatus Filomicrobium marinum Y
Pathway
fiy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1229_v1_0186 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fiy03019
]
BN1229_v1_0186 (recQ)
03400 DNA repair and recombination proteins [BR:
fiy03400
]
BN1229_v1_0186 (recQ)
Enzymes [BR:
fiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN1229_v1_0186 (recQ)
Messenger RNA biogenesis [BR:
fiy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN1229_v1_0186 (recQ)
DNA repair and recombination proteins [BR:
fiy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN1229_v1_0186 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
HTH_40
ResIII
DUF3613
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
CPR15048
UniProt:
A0A0D6JAK6
LinkDB
All DBs
Position
1:complement(182348..184531)
Genome browser
AA seq
727 aa
AA seq
DB search
MVVAHTSAKSTLHAPDMDSAQRILEDVFGYKHFRSHQNAIIGTLLNGGDVLALMPTGGGK
SLCYQIPALARNGTGVVVSPLIALMQDQVDALKILGVNAAYLNSTQTSAEQREIAASISR
GELDLLYVAPERLLQDRTLTLLERADIALFAIDEAHCVSQWGHDFRPEYRQLKVLAERFP
NVPRIALTATADERTRDEIITELRLEKADRYIASFDRPNIRYRIAEIGSVSARERLWNFI
ESEHPKDAGVVYCLSRRAVEETAAWLQRKGREALAYHAGLPAETRASAQSRFLNEDGLII
VATIAFGMGIDKPDVRFVGHLSLPKSIEAYYQETGRAGRDGEPANAWLAYGLQDIIQQRQ
WIAASEGSEAFKQVQRGKLDALIGLAESPGCRRQALLSYFGETLSEPCGNCDNCLEPPAT
TDGTVLAQKALSTVYRTGQRFGVGYLIDILSGKAEERAIRLSHDKLSVFGIGKDVDATEW
RGLFRQLVAAGLLTGDEEGRGTLALTDKARPLLRGEQTFLMRAAAPARPRAKSRSSQGAP
KLTVSETDQPLFEALKALRIRLASAAKVPPYVICHDRTLAELAQLKPATLDALNNITGLG
ASKIRRYGDALIQTITNFQPHPMLQNRLGASVNATLALHIQGLAPEAIAAERKIELATVH
GHFADAIEAGLLTAEDVLELDASDIDEIHAVFDRLDTLETGKLGPAYAALDSRYDYGVLK
CILAELA
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcgcccacaccagcgcaaaatcaacgcttcatgcacccgacatggactctgcg
caacgcatcctcgaagatgtgttcggctataagcacttccgttcgcaccagaatgcgatc
atcgggacgttgctgaacggtggggatgttctggccctcatgcctacgggcggtggcaag
tcactatgctaccagatcccggcattggcacgtaacggaacgggcgtcgtcgtctcgccc
ctcatcgctctcatgcaggatcaggttgacgcccttaagatcctgggcgttaacgccgct
tacctcaattcgacccaaacttctgccgaacaacgcgaaattgcggcctccatttcgcga
ggcgaactcgatcttctgtatgttgcgccggagcgcctgcttcaggaccgtacgctcacc
cttctcgaacgcgccgacattgccctcttcgcaatcgatgaagcgcactgcgtctcacag
tggggtcatgacttccgccccgaatatcgccagctcaaagtgttggccgagcggttcccg
aatgtgccccgtatcgcattaacggccacggcggacgagcgcacacgcgacgaaatcatc
actgagcttcgtctagaaaaggccgatcgttacatcgccagcttcgatcgcccaaacatc
cgctaccgtatcgccgaaattggctcggtcagcgctcgcgaacggctctggaatttcatc
gaatccgaacacccaaaagatgccggcgtcgtctattgcctatcgcgccgtgccgtggaa
gagaccgccgcgtggcttcagcgtaagggccgcgaagcgctcgcataccatgcgggcctg
ccggccgagacacgcgccagtgctcaatcgcgcttcctcaatgaagatggccttatcatt
gtcgccaccatcgcctttggcatggggatcgacaaacctgacgtcaggtttgtcggccac
ctcagcctgccgaaatccatcgaagcctattatcaggaaaccggccgcgctggccgcgac
ggagaacctgccaacgcgtggctggcttacggtctgcaagatatcatccagcaacgccaa
tggatcgcggcgagtgaaggctcggaggctttcaaacaagttcaacggggaaagttggac
gcgctgattgggttggccgaaagccctggttgccgccggcaagcgctgctctcctatttc
ggagagacgctgagcgagccctgcggaaactgcgacaactgtttggagcccccagcaacc
acggacggcaccgttctcgcgcagaaggccctctcgaccgtctaccgcaccggccaaaga
ttcggtgttggctacctgatcgacatcctctcaggcaaagccgaagagcgcgcaattcgg
ctctctcacgacaagctctccgtgttcgggatcggcaaagatgtggacgctacagaatgg
cgcggcctgtttcgtcaactcgtcgctgccggcttgttaaccggcgacgaagaaggacgt
gggactttggccctcacagacaaggcgcgtccgttattgcgcggcgaacaaacgttcctg
atgcgcgcggcagctcccgcacgaccacgagcgaaatctcgaagcagccaaggcgcaccg
aagctcacggtctccgaaacggaccagccgttgtttgaagcgctcaaggcactgcgcata
cgcctagccagcgcggctaaagtgcccccttacgtcatctgtcatgaccgtacgttggcc
gaactcgcacaattaaaaccggcaacgctcgacgctctcaataacatcaccggccttgga
gccagcaagatacgccgctacggtgacgccttgatccagacaattacaaatttccaaccc
catcccatgctgcaaaacaggctgggtgccagcgtcaacgcaacattggccttgcatatt
caggggctcgccccagaagcgattgccgctgagcgcaagattgaactagcgaccgtacac
ggccatttcgcagacgccatcgaagccggactgctgactgccgaagacgtacttgagctc
gacgcatcggatatcgatgagatccacgccgtctttgaccgtctcgacacactggaaaca
ggcaagctcggaccagcctatgcagcgctcgacagccgctacgattacggtgtcctgaaa
tgtattctggcagaacttgcctga
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