Candidatus Fluviicola riflensis: CHH17_01800
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Entry
CHH17_01800 CDS
T05019
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHH17_01800 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flu03021
]
CHH17_01800 (rpoB)
03400 DNA repair and recombination proteins [BR:
flu03400
]
CHH17_01800 (rpoB)
Enzymes [BR:
flu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHH17_01800 (rpoB)
Transcription machinery [BR:
flu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHH17_01800 (rpoB)
DNA repair and recombination proteins [BR:
flu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHH17_01800 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ASS47504
LinkDB
All DBs
Position
425728..429540
Genome browser
AA seq
1270 aa
AA seq
DB search
MATTSNTLTRINFASSKNQFAYPDFLDIQLKSFQEFFQLETTPENRESEGLYKVFAENFP
ITDTRNQFVLEFLDYFIDPPRYTIEECIERGLTYSVPLKAKLKLYCTDPEHEDFETIVQD
VYLGTIPYMTPKGSFVINGAERVIVSQLHRSPGVFFGQSRHANGTKLYSARVIPFKGSWI
EFATDINSVMYAYIDRKKKLPVTTLFRAIGYETDKDILEIFGLADEVKVNKANLKKAVGR
RLAARVLKSWIEDFGDEDTGEVVSIERNEVILDRETMLEEFHIDTILDAGVKTLIFHKED
ANTADYTIIYNTLQKDTSNSEKEAVEHIYRQLRNAEPPDYETAKGVFEKLFFSDARYDLG
EVGRYRMNKKLNIDSSEESRVLTKNDILCIIKYLIELINSKADVDDIDHLSNRRVRTVGE
QLYAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQT
NPLSEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVF
AKVNKLGFIETPYRSVSAGKVDTTSEPIYLSAEEEDEQMIAQANALVDEKGNFLSDLVKA
RYEGDFPVVAPKDLSLMDVGANQIASIAASSIPFLEHDDANRALMGSNMQRQAVPLLKPQ
SPIVGTGIEQLVARDSRVLINAEGPGSVEYVDANEIVIRYDWSNEDKLVSFDSEVTRYGL
TKFQKTNQSTTINLKPIVRKGDRIEKGQVLCEGYATQGGELALGQNLKVAFMPWKGYNFE
DAIVISERVVRDDIFTSIHIDEYALEVRDTKRGMEELTSDIPNVSEEATKDLDENGLIRI
GAEIKEGDILIGKITPKGETDPSPEEKLLRAIFGDKAGDVKDASLKAGPSLRGVVIEKKL
FSRAIKDRKSKAQDKPVLEVLDTEYDKDYAVLKERLVEKLMSVLGEHKSAGVFNNFKEEI
IKKGTKFAQKNLIAIDYTIVNPTAWTSDQHVNALVSRVLHNFTIKANDLLGIYKRKKFHI
SVGDELPAGIVKMAKVYVAQKRKLKVGDKMAGRHGNKGIVANIVRAEDMPFLEDGTPVDI
VLNPLGVPSRMNLGQIYETVLGWAGEKLGVKFATPIFDGAKPYEIDEWTAKAGVPKSGKT
YLYDGGTGERFHQTATVGVIYMLKLSHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGAANILQEILTVKSDDVMGRAKAYESIVKGDNIPEPGIPESFNVLLHEL
RGLGLSISMD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacaacaagcaacacattaacgagaattaattttgcgtcaagcaaaaatcagttc
gcttatccggattttctggatattcagcttaaatccttccaagagtttttccagttggaa
acaacccctgaaaatcgtgaaagtgaaggattgtacaaggtatttgcggagaacttccca
attactgatacacgaaaccaattcgtgttggagttcctcgattacttcatcgacccgcct
cgttacaccatcgaagagtgtatcgaacgtggtttgacttacagcgttccgctgaaagca
aaactgaaattgtattgtaccgatcctgaacacgaagattttgaaaccatcgtgcaggac
gtatacctgggtacgattccgtacatgacacctaaaggatcattcgtgatcaacggtgcc
gagcgtgtaatcgtttctcagttgcaccgttcaccgggagtgttcttcggacaaagtcgt
cacgcaaacggtactaaattgtactcggcgcgtgtgattccgttcaaaggatcctggatc
gaatttgcaacagatatcaacagtgtaatgtacgcttacatcgaccgtaagaagaaattg
cctgtgaccacattgttccgtgcaattggttatgaaactgataaagacattctggaaata
tttggccttgccgacgaggtaaaggtgaataaagctaacctgaaaaaagccgttggtcgt
cgtttggctgcacgtgttttgaaatcatggatcgaagatttcggtgatgaggatacaggt
gaagtagtttccattgaacgtaatgaagtgatccttgatcgtgaaacaatgctggaggaa
ttccacattgatacgattcttgatgctggtgtgaaaacgttgatcttccacaaagaagat
gcaaacacagctgattacaccatcatctacaatacacttcagaaagatacgtccaattcg
gaaaaagaagcggtagagcacatttaccgtcagttgcgtaacgctgaaccacctgattat
gaaacggcaaaaggagtattcgagaaattattcttctctgatgcacgttacgatttaggt
gaggtaggtcgttaccggatgaacaaaaaattaaacatcgacagctcggaagagtcgcgc
gtgttgacgaaaaacgatattctttgcatcatcaagtatttgatcgaattgatcaactcg
aaagcagatgtggatgatatcgatcacttgtcgaatcgtcgtgtaagaactgtaggtgaa
caattatatgcacaattcggtgtaggtttggcacgtatggcccgtacaattcgtgagcgt
atgaacgttcgtgataacgaggtctttactccaatcgacttgatcaacgcgaagacactt
tcttcggtgatcaattccttcttcggaaccaaccagttgtctcaattcatggatcagacc
aacccgctttctgaggtaactcacaagcgtcgtttgtctgcactaggaccaggtggactt
tcacgtgagcgtgcaggtttcgaggtacgtgacgttcactacacacactacggtcgtttg
tgtaccattgaaacaccggaagggccgaacattggtttgatttcttccctttgtgtattc
gccaaggtaaacaaactagggttcattgaaactccttaccgttcggtttccgccggtaaa
gttgatacgacttcagagccgatctacttatctgccgaagaggaagatgaacaaatgatt
gcccaggcaaatgcattggtcgatgagaaaggaaatttcctttctgatttggttaaagcg
cgttacgagggtgatttcccggtggtagcaccgaaagatttgagtttgatggacgtaggt
gccaaccagattgcatcgattgcagcatcttctattccgttcctggagcatgatgatgcc
aaccgtgcattgatgggatcaaacatgcagcgtcaggctgttccgttgctgaaaccgcag
tctccgatcgtgggaacgggtatcgagcaattggtagcacgtgactcccgtgtattgatc
aacgctgaaggtccgggatctgttgaatatgttgacgcgaatgaaatcgtgatccgttac
gactggtcaaacgaagataaactggtaagctttgacagcgaagtgacacgctacggctta
acgaaattccagaaaacaaaccaaagcacaacgatcaacctgaaaccgatcgttcgtaaa
ggtgaccgtattgagaaaggacaggttctttgcgaaggatatgcaacacaaggtggtgaa
ttggcacttggacaaaacctcaaagtggcattcatgccatggaaagggtacaacttcgag
gatgcgattgtgatttctgagcgtgtagtacgcgacgatattttcacgtctatccacatc
gatgagtacgcattggaagttcgtgatacgaaacgtggtatggaggaattaacttccgat
attccgaacgttagtgaagaagctacaaaagatttggacgaaaacggtttgatccgtatc
ggtgccgagattaaagaaggtgatatcctgattggtaaaattacgccgaaaggtgaaacc
gatccgtcgccggaagaaaaacttttgcgtgccatctttggtgacaaagcgggtgatgtg
aaagatgcttctctgaaagcaggcccgtcgttgcgtggtgtggtgattgagaaaaaattg
ttctcacgggcaattaaagatcgtaaatcaaaagcgcaggacaaaccggtgttggaggta
ttagatactgaatacgacaaagattacgctgtattgaaagagcgtttggtggagaaattg
atgtcagttcttggtgagcataaatctgccggagttttcaataacttcaaggaagaaatc
atcaagaaaggaacgaaattcgctcagaaaaacctgattgcaattgattatacgattgta
aatcctacggcttggacaagcgaccaacacgtaaatgccttggtgagccgtgtattgcac
aactttaccattaaggcaaatgacttgttgggaatctacaagcgtaagaaattccacatt
tctgttggagatgagttgcctgcaggtatcgtgaaaatggccaaagtttatgttgctcag
aaacgtaagttgaaagtgggtgataaaatggcgggtcgtcacggtaacaaaggtatcgtt
gctaacatcgttcgcgctgaagacatgccattcctggaagatggaacaccggtagatatc
gtattgaatccattgggtgtaccttcccgtatgaaccttggtcagatttatgaaacagtt
ctaggatgggcaggtgaaaaactgggtgtgaaattcgctacaccgattttcgatggtgcg
aaaccatatgaaatcgatgagtggacagctaaagcgggcgttccgaaatctggtaaaact
tacctgtatgacggaggaaccggagagcgtttccaccagactgcaacagttggtgtgatt
tacatgctgaaactatcgcacatggtagatgacaaaatgcacgcacgttcaatcggacca
tactcattgattacacaacaaccattgggtggtaaagcccagttcggtggtcaacgtttt
ggtgagatggaggtttgggcactcgaagcatttggtgctgcgaatatccttcaggaaatc
ctgactgtgaagtcggatgatgtgatgggccgtgcgaaagcttacgaatccatcgtaaaa
ggagacaacattcctgaaccgggaatcccagaatcattcaatgtattgttgcatgagttg
agaggtcttggtttaagtatctccatggattaa
DBGET
integrated database retrieval system
