Flavobacterium sp. SLB02: GIY83_12095
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Entry
GIY83_12095 CDS
T10548
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
flz Flavobacterium sp. SLB02
Pathway
flz00040
Pentose and glucuronate interconversions
flz01100
Metabolic pathways
flz02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
flz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
GIY83_12095
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GIY83_12095
Enzymes [BR:
flz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
GIY83_12095
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pectate_lyase_5
zf-C2H2_assoc
Motif
Other DBs
NCBI-ProteinID:
QGK74772
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Position
3408802..3409911
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AA seq
369 aa
AA seq
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MKIKSTFSVFLLTLILGFASCNNEEIASSANDESTSIETTPVSGNVTAKIGNCAQVPGWA
SQNGSVTGGGSAAETNVTTYAQLKSAIENSSVKVIKVTGTITVTTRLSLQDQTGKTIYGA
NGAKLVSTNQTKEASGIINIKRCKNLIIRNLIFEGPGAYDTDGWDNAILDECTNVWVDHC
EFRDGVDGNFDIKNKSDYITVSYTKFGYLKAPKPGGSGGSDDHRYSNLIGSSDGATGDRG
KLRITFARCWWAPGCKERMPRVRFGKVHLVNNFFNSTVSNKCIAAGFEADIRVEANVFEG
VKTPIDLMTGYTAVTAVDNVFTNTTGNQAGSKTAFTPPYSIVKLDKTAVKADVSANAGAT
LGGNICGSF
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattaaatcaacattctcagtgttcctgttaactctgattttaggttttgcatcg
tgtaacaacgaagaaattgcttcttctgcaaatgatgagagtactagtattgaaactaca
cctgtatctggtaatgtaactgcaaaaattggtaactgtgctcaggttccgggatgggct
tcacaaaacggaagtgtaaccggtggaggatctgctgctgaaacaaatgttactacttat
gcccaattgaaatctgcaattgaaaacagttctgtaaaggtcatcaaagttacgggtacc
attactgttacaacaagattatcattacaggatcaaaccggtaaaactatttacggtgca
aatggtgcgaaattagtttcgaccaaccaaactaaagaggcttctgggattatcaacatc
aaaagatgcaaaaacttaattatcagaaaccttatttttgaaggacccggagcttatgat
actgatggatgggataatgccattcttgacgaatgtacaaacgtatgggtagatcactgc
gaattcagagatggtgtcgacgggaacttcgacattaaaaacaagtctgattatatcacg
gtttcttacactaaatttggctacctaaaagcaccaaaaccaggtggatcaggaggttct
gatgatcacaggtattcaaacctaattggctcaagtgatggtgctacaggagatcgtgga
aaattaagaattactttcgctcgttgctggtgggctccgggatgtaaagaaagaatgcca
agagtacgttttggaaaagtgcatttagtaaacaacttcttcaacagtacagtaagcaac
aaatgtattgctgcaggttttgaagctgatattcgtgttgaagcaaacgtttttgaaggt
gtaaaaactccaatcgatttaatgactggttatacagctgttacagcagttgataatgtt
tttactaatactacaggaaatcaggcaggaagcaaaactgctttcactcctccttattca
attgtaaaactggataaaacggctgtgaaagctgatgtttcggctaatgcaggggctact
ttaggcggcaacatctgcggatcgttttaa
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