Fomitiporia mediterranea: FOMMEDRAFT_108365
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Entry
FOMMEDRAFT_108365 CDS
T03132
Name
(RefSeq) prokaryotic type I DNA topoisomerase
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03440
Homologous recombination
fme03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FOMMEDRAFT_108365
03460 Fanconi anemia pathway
FOMMEDRAFT_108365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fme03032
]
FOMMEDRAFT_108365
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_108365
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FOMMEDRAFT_108365
DNA replication proteins [BR:
fme03032
]
Eukaryotic type
DNA Topoisomerases
FOMMEDRAFT_108365
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
FOMMEDRAFT_108365
FA (Fanconi anemia) pathway
FOMMEDRAFT_108365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
zf-CCHC
Toprim
zf-CCHC_2
zf-CCHC_3
Mucin
Motif
Other DBs
NCBI-GeneID:
18670345
NCBI-ProteinID:
XP_007266922
JGI:
Fomme1_108365
LinkDB
All DBs
Position
Unknown
AA seq
1081 aa
AA seq
DB search
MRVLCVAEKPSIARSITGILSGGQYNTRATRNKYIKNYDFDYPQTRSTFTVTAVSGHLME
HDFDEAYRSWGSCDPFTLFEAPVIARIAGDNKTIEENLKKEARRADELMIWTDCDREGEN
IGAEVVRVCRKVNVGIRVTRARFSAIIPQQIHRAAQNPGLLDQAQADAVEARTILDLRLG
AAFTRMQTLNLQRRFEQIKDTGTPVSYGPCQFPTLGFVVSRYEQVQAFVPEAFWYIYLSL
SRSGASVEKGGKKKNGEEETTEFSWRRVRLFDRLAAEAIYEYVVENPVARVTKKTCKPTK
KWKPLPLTTIELQKAGSRLLRLAPKTVLDIAEKLYQRGLLSYPRTETDQYDPQFDFMSLI
GKQTVDPTWGGFATQLQNGEFTSPRKGKNNDKAHPPIHPTNYAGNLAGDEKRVYEFVTRR
FLASCHKDAEGQETTVEVCCGGEYFSASGLIVLARNYLDVYVYDKWNGRYLPNFDEGEQF
MPSICELREGETSSPTLLTEADLVGLMDKNGIGTDATIAQHIQMVTDRGYVIERMEGVVK
YLVPSTLGIGLVEGYNEIGFERSLSKPQLRRDTERAMVQVCERTKSKHDMLEQSIEQYKE
VFIRARREFDKIVTSVSRYLEGDGNRDNNAAGAGGNNPGGGGGGGAGGGGDGGGRGGRGG
RGTRGGRGGTGTTRRGGRGGGSSSRGDGADGGSGPKRARTTGRKKKATASEETVESDIDL
DGPTQVAHQPPPPPVPKLRSRVILVRKSAENQAGPGPSSSSSFSTANQPSRNPAPFRSGS
GPAVEVAQIVQCQCGVQAGERTVVKEGPNKGRRFRKCGKGDECGFFEWIDGPLTSISSTS
FPSGSATSRQMDTHSDSNILRTNNNANRPATSDRRCKCDLAAVQRTVVREGPSKGRNFWT
CPSSNQCGYFEWEEPERSVTAGTRSDECFNCGQSGHWASACPNGAQANRNRAMSIDSSAG
NVNPNPSSSSTACFKCGEEGHYSSACPNGKNSSIGACFKCGDEGHYSNACPNGEPNTRRS
KSTTTTTKSRSTTTTSKSNTASKRGRAGSTSSTSTRGGSKSKSKRGAKGAGRSHFAAADH
Y
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttctttgtgtagcagagaagccgtctattgcgcgttcgattactgggatattg
tctggtggacaatataatacgcgagcaacacgaaacaaatacatcaagaactatgacttc
gactacccccaaacgaggtcaactttcacagtcacagccgtctcaggtcaccttatggaa
cacgatttcgacgaggcgtatcgatcatgggggtcctgcgatccattcacactcttcgag
gcccccgtgatagccagaattgctggggataataagacaattgaagagaatttgaagaaa
gaggcgaggagggcggatgagttgatgatttggacggattgtgatcgggaaggagagaat
attggtgctgaggttgttagggtttgtaggaaggtgaatgtggggattagggttacgagg
gcgaggtttagtgcgattattccgcagcaaatccaccgcgccgcccaaaacccaggtctc
ctcgaccaagctcaagcagacgcagtcgaagcgcgtacgatcctcgacctgcgtctcgga
gctgcgtttacgagaatgcaaactctcaacctccaacgtcgattcgagcagattaaagat
actggtacacccgtttcttacgggccttgtcagtttccgactctggggtttgtggtgtcg
aggtatgaacaggtgcaggcgttcgtacctgaggcgttttggtatatctacctatctttg
tcgcggagtggtgcgtcggtggagaaaggagggaagaagaagaatggtgaggaggagacg
acggagttttcgtggagacgagtgaggttgtttgatcggttggctgcggaggctatttat
gagtatgtggtggagaacccggtggcgagggtgacgaagaagacgtgtaagccgacgaag
aaatggaagccgctgccattgacgactattgaacttcaaaaagcagggtcgaggttgttg
aggttggctccgaagacagtccttgatattgcagagaagctctatcagcgtggattatta
tcttatccacgcacggaaacagatcaatatgatcctcaatttgatttcatgtctctaata
ggcaagcaaactgtagatcctacttggggtggattcgcaacgcaacttcaaaatggtgaa
ttcacctctccacggaaaggcaagaacaacgacaaagcgcatcctcctatccatcctacc
aattatgctggaaaccttgctggtgatgagaagcgagtatacgagtttgtgacgaggaga
ttcctagcgtcttgtcacaaagacgcagaaggtcaagaaactactgtagaggtatgctgt
ggtggagaatacttctccgcctcaggccttatcgtccttgcaagaaactacttagacgtc
tacgtctacgacaaatggaacggtcggtacctacccaacttcgacgaaggcgaacaattc
atgccgtcaatatgcgaactcagagaaggcgagacctcttctccgactttgttgactgaa
gcggacttggttgggttgatggataagaatggaattgggacggatgcgactattgcacag
catattcagatggttacggatagggggtatgtgattgagaggatggagggggtggtgaag
tatcttgtaccgtcgactctgggtattgggcttgtggaagggtataatgagattgggttt
gagaggagtttgagtaagccgcagttgaggagggatacggaaagggcgatggtgcaggtg
tgtgaacggacgaagtcgaagcatgatatgctcgagcagagcattgaacagtataaagaa
gtctttattcgggctcggagggagtttgataaaattgttactagcgtcagtcgatatctt
gaaggtgacggaaaccgagataataacgctgctggtgctggaggtaataatccaggtggt
ggcggaggaggaggtgcaggtgggggtggagatggtggaggccgcggaggtcgtggtggt
cgtggaactagaggtggtagaggcggaactggaactacgcgaagaggcggacggggaggc
ggttcttcgagcagaggtgatggtgccgacggaggatcaggtcccaaacgtgctcggaca
acgggtcgtaaaaagaaggctactgctagcgaagaaacggtggagagcgacatcgacttg
gacggacctacgcaagttgctcatcaacccccgcctccacctgtcccgaaacttcgatcc
cgagtaattttagttcgaaaatccgcagaaaatcaagccggaccaggtccatcctcatcc
tcatcattctcaactgccaatcagccttcacgcaatccagctcccttccgatccgggtca
ggccctgctgttgaagtagcacaaatagtacaatgtcagtgcggagtgcaggcaggtgaa
cgaactgttgtgaaagagggtccgaacaaggggaggaggttccgaaagtgtgggaaggga
gacgagtgtggtttctttgagtggattgatggaccgttgacttctatctcttctacctcc
ttcccttctggttctgcgacgtcaaggcaaatggatactcattcggattctaacatctta
cgaacgaataacaacgctaatagacctgctacttcggatcggcgatgtaagtgtgaccta
gcagccgtacagcggactgttgtgcgtgaggggccgagcaagggacggaatttctggacg
tgtcctagttcgaatcagtgtgggtattttgagtgggaggagcctgaacgaagtgtgacg
gctggtactaggtcggatgaatgttttaattgtggacagagtggacattgggcaagtgca
tgtccgaatggtgctcaggccaatcgaaaccgcgcaatgagtatcgactcgtcggcaggt
aacgtcaatccgaatccgtcctcgtcctcgactgcgtgcttcaagtgtggtgaagagggg
cactacagtagtgcctgtccaaatggaaaaaactcgagtattggagcctgctttaagtgt
ggagacgaagggcattatagtaatgcatgccctaacggcgaacctaacactcgaagaagc
aaatccaccactaccactactaaaagccgtagcacgactaccacatctaaaagtaatact
gctagtaaacgaggacgagctgggtcgacgagttcgacttctactcgcggagggagtaaa
agtaaaagtaaacgtggggcgaaaggtgctgggaggtcacattttgctgcagcagatcat
tattaa
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