Fomitiporia mediterranea: FOMMEDRAFT_108426
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Entry
FOMMEDRAFT_108426 CDS
T03132
Name
(RefSeq) TPR-like protein
KO
K12600
superkiller protein 3
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_108426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_108426
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
FOMMEDRAFT_108426
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_16
TPR_CcmH_CycH
TPR_1
TPR_8
TPR_14
TPR_17
TPR_11
TPR_12
TPR_6
TPR_9
TPR_22
ANAPC3
ARM_TT21_N
TPR_MalT
TPR_Slam
PknG_TPR
TPR_21
RPN7
HrpB1_HrpK
Sel1
DUF2225
Motif
Other DBs
NCBI-GeneID:
18670346
NCBI-ProteinID:
XP_007266973
JGI:
Fomme1_108426
LinkDB
All DBs
Position
Unknown
AA seq
1437 aa
AA seq
DB search
MTTFVKSKLKSARDYIGKKNFEKAREAAEEVISYEPDNYNANVFLGLAFLELGQLDQSEQ
AYIRATQSQPDQALAWQGLVKFYEQTERWDKYAKTLKVLLDLFSKTGDATKCAEQLQKYI
EFRRRKGSRKDIADALLLLLPDSPYYLILSTLPPPDPTAPTATTTFATQSAVHNTLPTLE
EIVTLTEAEEANVITREVEKRRTRLDAASAGPEALKKQVGLSVWTTSKLPELYNEILNHP
NTSDDLRRETEAKLLRYKHRHRCALGLNGPEGKLKAELGSEVQEMVDGIVLLNIPDEFAW
SLYVEGKNVDKIEDYGLDILRKYMGLFPDSLLTRAIRGYFLYNNIPLHDEEEEGEEEKDE
PDDSDSDPFDHVLEATAGLPDSILAHRMLCDIYVIEEDYQNTIAASEKGLQLIARHRIDT
GTDLTQVRKAFNASLATGLVHLFPPKHHARAIRVLDDVLSFEPNNVTCLMGRAYVFQASR
RWDDAAELFLNVVNQLPDDVEVGLVAKEEHAWCLVERAEPALDVAVEELQFVLNRIEPLD
GYEQRKARVWWRLGQCYWRLGANNRENAYRHFITSLKRSSSFAPAFTSLGFYYLEGAEPP
DPARAAKCFQKAFELDAREVDAAQRLAHSFAEDREWDLVEVVARRTIEGEGGLGGGLGDA
EATSIAKHKPTNAWAWKALGVVELNRRNYPPAMQAFQVALRSNENDGLSWLRLGEAYMKA
GRHAAAVKALNKAHELIPEDWMCVYLLGEVRRQTGQLLQAIETFMQVLEKVPDETTVQLS
LAETYVSQGRTELSTGYLARASTSFLLAIMTSLDLIDSSPGFRRLALKTIADALLKLSEF
SVFADLELAKSVFARLAVLHKGQSDERLAGIIDYPLVSQSAPIDGTLSLRLAVTTYSLRL
SLFSKDEESIGSAWFDLGVGVSRIAASTRTTNVKEKAEKQATEFVRLALLADSGNPTFWN
AFGDFNFLSKPMVAQHAYIKALEINSKDVATWTSLGLLYLHNADLELANDVLLKAQTLDP
DYTLAWVGQGLVASANGHDGDANALFEHAVGLTADSPAADIEYAYRSFRKLPMLASRSNA
STQDALLPLFFSLDRYSRRKADDPSALHLFGLVCERLHLDDLGVKVLSKAIKQLEAIYEE
TEDSVIERQYAIANTSLARVLLATGKLEAAIETFETAFGLLPTDDPSKEVIALRSLCQFG
SGIASFHLGEFDEALVKFETAQEIASANPLIRGQVTVLLAKALWAIGSDAFRDSAKEQLF
NCVNQDPNNLTAVVALAAMGLLTGDEALIDAALSEILSLPLDERHRRDPGRDIENLLTNH
YLAEGNIQKAQSVVQGTVHAEPSHLGSRKELAIFSISQGRSGIAQALLTSLLNSSDLYNV
EGAHEAVRLLAISSIISGIKSPAKAESQKVAQKAIMLAPWDAKNWLSLAYVKNAAAK
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgactacgtttgttaagtcaaagctaaagagtgcgagagattacattggaaagaaaaac
ttcgaaaaggcgcgtgaagcagcggaagaggtcatctcttacgagccagataactacaac
gcaaatgtgttcctaggccttgcgttcctcgagcttgggcagctcgaccagagtgagcaa
gcatacatacgcgcgacgcaatcgcagccagatcaggcacttgcgtggcaaggccttgtc
aaattttatgaacaaacagaacgatgggataagtatgcaaagacgctaaaggtgctactg
gacctgttctcgaagactggagatgcaaccaagtgtgctgaacagctacagaagtacatc
gagtttcgtcggcgaaagggttcgaggaaagatatcgcagatgcactacttctgcttctt
cccgattcaccatattatcttatactatccacgctacctccgcccgatccaactgctccg
acggcaacaacgacattcgcgactcaatcagccgtacacaacactttaccaacgcttgaa
gagattgtgacactcaccgaggcagaagaggcaaatgtaataacacgcgaagtagaaaag
cggcggactcgattagatgcagctagtgccggcccagaggctctcaagaaacaagttggt
ctaagcgtatggacaacatcgaagctcccagagctctacaatgagatcctaaatcaccca
aatacctctgatgacctgcgacgtgagactgaagccaaactcttgcggtacaaacacagg
catcgctgtgcacttggtttgaacgggcccgaagggaagcttaaggccgaactaggaagt
gaagttcaggaaatggtcgacggcatagtgcttctgaatattccagacgagtttgcatgg
tcactgtatgttgaagggaagaatgtcgataagatcgaggactatgggcttgacattctt
cggaagtatatgggtctgtttccggattccctcctaacgcgggctattcgtggctatttc
ctttataacaatatcccactccacgacgaagaggaggaaggggaagaagagaaggacgaa
ccggacgacagtgacagtgatccgttcgaccatgtcctggaagcaactgctggtttgcct
gattcgatcctcgcgcatcgaatgctatgcgacatatatgtaattgaagaagactatcaa
aataccatagctgcttcagagaaggggcttcaactcatcgcacgacataggatagatacc
ggaaccgatctcacccaagtacggaaagcatttaatgcatcacttgcaacaggcctcgtt
catcttttcccacctaaacaccacgcccgagctatccgtgtcctcgatgacgtgctttcg
ttcgagccgaataacgtgacgtgtttgatgggtcgggcatacgtatttcaggcttctcgc
aggtgggacgacgctgcagaactatttcttaatgttgtgaatcaacttccagacgatgtg
gaggtcggcctcgtagcaaaagaggagcacgcatggtgcctagtggagagggcagaacct
gccctcgatgtagcagttgaagaacttcagttcgttctcaacagaatcgaacctttggat
ggctatgaacaacggaaggcaagagtttggtggcgacttggccaatgttattggcgcctt
ggagccaacaacagagagaatgcatatcggcatttcatcacctcactcaaacgctcctct
tcctttgctcctgctttcacgtctttgggattttactacttggaaggcgcggaacctcca
gatcctgctcgtgcagccaaatgttttcaaaaagcattcgaacttgacgcacgagaagtg
gatgccgcccagagacttgcgcacagttttgccgaggatagagaatgggatctcgtggaa
gttgttgcacggaggactattgagggtgagggcgggcttggaggtggactgggcgatgcg
gaagctaccagcattgccaaacacaaacccacgaatgcctgggcatggaaggcacttgga
gtagtcgaactgaataggagaaactatcctccggcaatgcaagcatttcaagttgctctt
agatcaaacgagaacgacggtttatcatggctccgcctgggcgaagcatatatgaaggct
ggacgacatgctgcagccgtgaaggccttgaataaggcacacgagcttataccggaggac
tggatgtgcgtgtatctactcggcgaggtccgacggcagacaggacaacttctgcaagct
attgaaacgttcatgcaagtcttggaaaaggttcctgatgagacgaccgtgcagctttcg
ttggccgagacctatgtctctcaaggtcggacggaactctcaacaggttatctagcaaga
gcatcgacatctttccttcttgctatcatgacctcgctggatttaattgactcaagccct
ggatttaggcgtctagccctcaagacaattgccgatgctctgctcaaattatcagagttc
tctgtattcgcagatttagaactcgccaagagtgtgttcgctcgattagcagtgttgcac
aagggccaaagtgacgagaggttagctggcatcatcgactatccacttgtgtcgcaatct
gcacctatcgatggaaccctttctctccgcctcgctgtgactacatatagcctccgctta
tcgttgttttcaaaggatgaggaaagcattgggagtgcttggttcgacttgggagttggc
gtgtctcgtatagcagcgtcgactcgcactaccaatgtaaaagagaaagctgagaagcaa
gctactgagttcgtacgtcttgcccttcttgccgattctggtaatccgacgttttggaat
gccttcggggatttcaatttcttgtcaaagccgatggttgcgcagcacgcttacatcaag
gctctggaaatcaattcgaaggatgtagccacctggactagcctcggtcttctgtatctt
cacaacgccgacctcgaacttgcaaatgacgtattgctgaaggcacagacccttgatcct
gactatactctggcgtgggttggccaaggacttgtggcttctgcgaacggacatgacggt
gacgcgaatgcattattcgagcacgcagtcggacttactgcagattcgcctgctgcagat
attgagtacgcgtatcggtcattccgaaaactcccaatgttggcgtctcgatcaaatgcc
tcaacacaagacgcgttactacccctgttcttttctctggaccgctacagcaggcgaaaa
gcagatgacccatctgcgcttcacctcttcggacttgtgtgcgaacgactgcatctggat
gaccttggcgtgaaggttttgtcaaaagctatcaaacagctcgaagcaatctacgaggag
acggaagattcggtcatcgaacgtcaatatgcaatcgctaacacgagccttgcgagagtg
cttctggcgacaggcaaactcgaagcagcaattgaaacattcgaaacggcattcgggctc
cttcccacagacgatcctagtaaagaagtgattgctctccgttctttgtgtcaattcggg
agtggtattgcaagcttccacctgggagaattcgatgaagcattggtcaagtttgaaacc
gcgcaggaaatagcaagcgcgaatcctctcattcgtgggcaggtgactgtgctacttgca
aaggcactgtgggctattggttccgacgcgttccgagattcagcgaaggagcagctgttt
aattgtgtcaatcaggatccgaataacttgacagctgtcgtcgctcttgctgctatgggc
ttgctcacgggtgacgaagcactcatagatgctgctttgtcggagatattgtctcttcct
cttgacgagcgacacaggcgagatccgggaagagacatcgagaatctgttgacaaaccat
tatctagcagaaggaaatattcaaaaggctcagtctgtagtacaaggaacagtacacgca
gaaccgtcgcatctcggatccagaaaagagctagcaattttctcgatatcccagggtcga
tcagggatcgcacaggctttactcaccagcttgctgaactcgtcggatttatacaatgta
gaaggagctcacgaggcagtgcgacttctagcgatttcttcaataatctccggaatcaag
tctccggcgaaggcagagtcacagaaagttgcacagaaggcgattatgcttgcaccttgg
gacgctaagaattggttatcacttgcatatgtaaagaacgcagctgcgaaatga
DBGET
integrated database retrieval system
