Fomitiporia mediterranea: FOMMEDRAFT_132264
Help
Entry
FOMMEDRAFT_132264 CDS
T03132
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_132264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_132264
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOMMEDRAFT_132264
Spliceosome [BR:
fme03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
FOMMEDRAFT_132264
Complex C
U5 SnRNP specific factors
FOMMEDRAFT_132264
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
18671761
NCBI-ProteinID:
XP_007263970
JGI:
Fomme1_132264
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAKVEPLSIESLLEKQRAEREAASKPKFLSKEERAKLAIEKRAQEIRGQKEKEESQRRER
EALEREADALRDRERFRDEGNRYGRGSRYDDRNQDRERDGRYGRRDQRGPRRDDRDRDRD
RAPPSSGLHNVPTAPRADRERSAATSHSASPAPSVPPPAVNGSSTLVDTSSTFVPQMNDN
DLSAIRSRYLGVDKKKRKIRKMNDRKFVFDWDEQDDTLAEDSPTAAGANRQGAQVMFGRG
HLAGMDDGGGVRRGSGNAETKFSDTLERRKAAKSGLDERHWTEKPLSQMKDRDWRIFRED
FSIATRGGQIPHPLRSWTESEIPPTILEVVEKVGYKEPSAIQRQAIPIGLQNRDLIGIAE
TGSGKTAAFVIPMLTYISNLPPFTEDNRHLGPYALILAPTRELAQQIESETRKFASPLGF
KCVSIVGGRSVEEQQFNLREGAEIIIATPGRLKDVIERHVIVLSQCSYIVMDEADRMVNL
GFEVDLTFILDKLPSEMLKGEDEGMMDVDGEMVRRGRTRVTTLFSATMPPAVERLTRKYL
KKPAIVTIGEAGRAVDTVEQRVEFINGDEKKRQRMIEILSKDGFPAPIIVFVNQKKTADM
VCRDVQRAGVRATTLHSGKNQEQREAALQSLRNGESDVLVATDLAGRGIDVQDVSLVLNY
QMANTIEAYVHRIGRTGRAGKVGTAITFLTNDDDEVMYDLRQEISKSPVSKVPPELAKHE
ASQARVTREMKRKRDADDQG
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagtagagccactctcgatagagtcgctcctagagaagcagcgtgcagagcga
gaagctgcttcaaagcccaagttcctttcaaaggaggaacgcgcaaaacttgcaatagag
aagcgtgcacaggagatcaggggacagaaggagaaggaagaatcccagagacgcgaacga
gaagccttggagcgtgaagcagacgctctgcgcgatcgggagagattccgggacgaggga
aacaggtatggcagaggcagtcgatatgatgatcgtaaccaggatagagaaagagatggc
agatatggtcgccgagaccaacgaggacccagacgagacgatcgtgaccgcgaccgtgat
agagcaccaccttcctctggcttacacaacgttccgacagcacctcgagcagatcgcgaa
agaagcgctgcaacctctcactctgcgtccccagcaccttccgtgccaccccccgcagta
aatggatcatctactcttgtcgacacatcctcgacgttcgtcccacagatgaacgacaac
gacctaagcgcaatccggtcccgctatcttggtgtcgataaaaagaagcgaaagatacgt
aagatgaatgatcgtaagttcgtcttcgattgggatgagcaggacgatacgctcgcagaa
gattcaccgactgctgctggcgcaaatagacaaggcgctcaggttatgttcggaagaggc
catcttgcgggcatggatgatggtgggggcgtgaggcgaggttcaggtaacgcggagacg
aagttctcggatacattggagagaaggaaggccgccaaatctggattggacgaaagacac
tggacggaaaaacctctaagccagatgaaagatagagactggagaatctttagggaggac
ttcagtatcgctaccagaggcggtcaaattccacatcctcttcgttcatggacggaatcc
gaaattcctccaactattttagaagttgtagaaaaggtcggctataaggagccatcagca
attcagcggcaagcgattccgatcggactgcaaaaccgagaccttattggtatcgcggaa
acaggatcgggtaaaacggccgccttcgtcataccgatgctcacgtatatttctaattta
ccaccttttactgaggacaatcggcatttgggaccatatgctctaattttagcgccgact
cgtgaacttgctcagcagatcgagtccgaaacccgcaagtttgcatcgcctctaggattc
aaatgcgtttcaattgttggaggacgttccgtggaggagcagcaattcaatctgcgtgaa
ggtgctgaaatcatcattgctacgcctggacgtctgaaagatgtaattgagcgacacgtt
attgtgctttcgcaatgctcttacatcgtcatggacgaggcggatcgtatggtgaatctc
ggcttcgaagtcgacttgacattcattctcgataagcttccatcagagatgctgaagggc
gaggacgagggaatgatggacgttgacggcgaaatggtgcggaggggtcgcactcgcgtg
actactctgttctctgcaacaatgccgccggccgttgagcgccttacacggaaataccta
aagaaaccggcgatcgttacgattggtgaagctggtcgtgcagtcgacaccgttgagcag
cgcgtcgagttcattaacggagatgaaaagaagaggcaacgtatgattgagattcttagt
aaagatggtttccctgcacctatcatcgtcttcgtgaaccaaaagaagaccgcagacatg
gtgtgcagagacgttcagcgggcaggcgtacgtgcaacaaccctacactctgggaagaac
caagaacagcgagaggcagcattgcagtccttgcgcaatggcgaatcggacgttttggtt
gcaacagaccttgctgggcgtggtattgacgtccaggatgtgagtctcgtgctcaattac
cagatggcaaacaccattgaagcttatgtccatcgaattggtcgtactggtcgtgctggt
aaagtcgggacggcgatcacgttcctcacgaatgacgatgatgaggtcatgtacgacctt
cgtcaagaaatttccaagagtcctgtatcaaaagtacctccggagttagcgaaacacgag
gcttcacaggcacgcgtgacgcgggagatgaagagaaagcgggatgcagatgaccaaggt
tga
DBGET
integrated database retrieval system
