Fomitiporia mediterranea: FOMMEDRAFT_87350
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Entry
FOMMEDRAFT_87350 CDS
T03132
Name
(RefSeq) Not1-domain-containing protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_87350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_87350
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FOMMEDRAFT_87350
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
FOMMEDRAFT_87350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
18680366
NCBI-ProteinID:
XP_007267520
JGI:
Fomme1_87350
LinkDB
All DBs
Position
Unknown
AA seq
1968 aa
AA seq
DB search
MDFENAVLALCQQPCFDHADLSLAQAGKLLQNLLSDSPLDEPLLVDPTQRQALVFSAQKK
FGAELVSPILAQLFQKLSLPPQTTLVQALNQLGPDISNDVEVVRGLLVRFGISDQNLPTN
EQITDTFMTLSRLTAEGAQLCDVGTLVRVLSSFRAQLDWSKAIEVFDWPERQGVDTNTLK
LLIAILVNSPRDADKPAVAGFWSNWKNSLYQLRLLDALLSLPSDTFNFVSLPGRRVVTVD
DVAAASPTIKTLAANVQSHTWNSLDLFEILVRLGDSEIENVRSYVREMLDKAVRISADIV
HMGLVQVPKPWNALQVEYSRQLLGMFLGGHPNHQLVFMRIWQIEPTYLLTALREFYDENP
MNITRILDVAQDLKILDSLLEVRPFVFALDVAALASRREYLNLDKWLSDNIEKYGADFLH
SIILFLDHKMQNEKIARTVDPQAENRTMALSPTTIAIFLRALRTFSNVMDERDAEYCVET
RNACLQIHPRLMVLSPSAENQEPGFNVVSYSTDIEAEVDGIFKQMYDEQITIDQVIIMLQ
RTKESTNTRDHEIFSCMLHFLFDEYKFFQTFYPPRELAMTGYLFGSIIQQQLVDYIPLGI
AIRYVIDSLQCPPDTNLFKFGVQALTRFESRLAEWKLLCEALLNIPHLAEQRPDIIEAVR
RALAAPTESAGAGGAGQLQGFSSALPLVEIQPAFTSIRPDVLEEGDFSTPPEETSDKILF
IINNLAPSNFEAKLTEMKERFEEIYSRWLADYLVDQRVSTEPNNHQLYLRFLDGLDSKPI
AKFILHETFVKSASMLNSDKTKSSTSERTILKNLASWLGQITLARDKPIKHKNLSFKEFL
IEGADSDRLVVAIPFVCKVLEGAAKSKAFRPPNPWLMAVISLLAELYHFAELKLNLKFEI
EVLCKALSIDLDTVEVANILRSRPQVEPMAGPGLPEMMPGIDALPIGGYEHAGDGQVIPI
GTTSGPEADRTVGAHIEEILANLATSVIINHQLAPLHTNHAFKQAVQEGIDRAVREIILP
VVERSVTIASITSRELCVKDFASEPNEEKLRKAGHMACQKLAGSLALVTCKDPLRTNMAA
HIRSYLLDHGFTEQMVPEQVIMLIVQDNIDVACEAIEKAAIDRAIKEVDAALAQSYDARR
RYRDVRSGQSFWDPLAVQSAFIAGLPDPLRIRPNGLQPLQQRVYEEFAFDSKRRVPGRPP
SIVQYARNDALQPTYSPSPIPDHQVAVANSAYMAQEQFNILVQKLESILSEIPYTSLALV
PSNHELRNVVNRVLSLALESNDRVRTPLFMSQKIVQHLYKTPSQIGRDIYVALLDQLCQS
FEEVAKEAINWLICAEDERKFNIPATVTLLRSHLITPTDEDMQLAKWIYASANSRPSLQD
FAAGLIRECLTSEPPVTTQHQFQYTLDALTQLVRASKATESVIQLLNELAGLPSQPSTEI
VPAVGLQPVKQETEQLQIVLLKRFQQWVGIFQSSSNPEKMFVQYVTALSKQGILKVEDMS
SFFFRVCAESSISHYTKSVAAGDFGHSFLALDAMSRLIVYIIKYHGDASGTNNLQAKVHY
FTKILSILVLVVANRHEEQGPAFQQKPFFRFFSSLLSDLSSLGDQLGNVYFHLLVALSDT
FSSLQPVYFPGFAFSWMTLISHRLFMPKLLLSENRDGWSAFHKLLLALFKFLAPMLRSAN
FTLASRNLYRGGLRLLLVLLHDFPDFLSAYYFSLCDVIPPRCTQLRNIVLSAFPASITLP
DPSLRNTKFETIPEMGPIPLVLSDFSAILKNGDLKGYLDQCLLSRMPQTSLATLKERMCL
PPGTATGEETYNVPLINAMVMYIGVSSVAQVKARSGSSVFIPTDPGVVALTYLAYNLDPE
GQYHLANAMILQLRYPNAHTHWFCCLMLYLFEHAKDDRFREIMTRVLMERFFVHRPHPWG
ALLTFIELVRNPKYDFWNKDFLRVAPEVTAILDNVCSCIPIVPLTSAH
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atggactttgagaatgccgtactcgcactgtgccagcaaccatgctttgaccatgcggac
ctgtcacttgcgcaagccggaaaattattgcaaaatttacttagtgattccccgttagat
gagcctctacttgttgatccgactcaacgtcaagcactcgtattctctgcgcagaaaaag
ttcggcgccgagctggtttcgccgattttggcgcagttattccagaagttgagtcttcca
ccgcagacgactcttgtccaggctctgaaccagcttggaccggacatctcgaatgacgta
gaggttgtgcgaggtcttcttgtaagattcggaatatcagatcaaaatcttccgacgaat
gagcaaatcacggacacctttatgacgctcagtcgtctcacggcagaaggcgcacagcta
tgtgacgttggtacacttgttcgggtgttaagcagctttagggcacaactcgactggagc
aaggctattgaagtatttgattggccggaaagacagggcgtcgataccaatactctcaag
ctccttatcgctatactcgttaactcgccccgagatgccgataagcctgccgtcgctggc
ttttggtccaactggaagaactctctctatcaacttcgtcttctcgatgcccttctctca
ctacctagcgacacgttcaattttgtgtccctccccggccgacgtgtggtcaccgtcgat
gatgttgcagctgcaagtcctacgatcaagactttggctgccaatgtgcagagccatacg
tggaattctctcgacttattcgaaatcttggtcagactaggcgactcagaaatcgagaat
gttagaagctatgtgcgggaaatgttggataaggctgttcggataagcgcggacattgtg
catatgggacttgtccaggttccgaaaccatggaatgcattacaggtcgaatactcgcgg
cagctgcttggcatgtttctaggaggacatccgaaccatcaacttgtcttcatgcgcatc
tggcagatcgaaccgacgtatcttttgactgctctgcgtgagttctatgacgagaatccg
atgaacatcacccgcatcctagacgttgcgcaagacctgaagatcctcgattctttgctg
gaagtacgtcctttcgttttcgctctggacgtcgccgctcttgcatcccgacgcgaatac
ctcaatctcgataagtggttgtcggacaacatcgagaaatacggagcagacttcctgcac
agcattattctgttcctagaccacaagatgcagaacgagaagatcgcaaggacagtagat
cctcaggcagaaaacaggacaatggcgttgagtccgactacaatcgcaatcttcctacgc
gctctacgcacattctcgaatgtcatggacgaacgagatgcagaatactgtgttgagacg
cgaaatgcttgcctgcagatccaccctcgactaatggtattgagtcctagtgccgagaat
caagagcccggatttaatgtcgtcagctattccacggatatcgaggcagaggttgatgga
atcttcaagcaaatgtacgacgagcagattacgattgaccaggtcatcatcatgctgcaa
cgcacgaaagagtctacgaatacccgcgaccatgagattttctcttgcatgctacatttc
cttttcgacgagtacaaattcttccaaaccttttatcctcctcgagaacttgcgatgacg
ggttacttattcggatctatcatacagcaacagctagttgattacatccctctcggtatt
gccatccgatacgtcattgattctctccagtgtcctcccgatacgaacctctttaaattt
ggcgtgcaagcgcttacacgctttgaatcgcgattagcagagtggaaacttctgtgcgag
gcgctgctcaacattccgcatcttgccgaacagcgaccggacatcattgaagcagttcgt
cgtgctcttgccgccccgaccgaaagtgctggtgccggtggggcaggtcagttgcaaggt
ttttcatcagctttacctttggttgagatacaacctgctttcacatccatccgaccagat
gttttggaggaaggggatttcagcacgccgccggaggaaacctcggacaagattctcttc
ataatcaacaatcttgctcctagcaatttcgaagcaaaacttacggagatgaaggagcgt
ttcgaagagatctattcgcgttggcttgcggattaccttgttgaccagcgtgtcagcact
gaaccaaacaaccatcagctctacctgcggttccttgacggtttggacagcaagccaata
gcaaagttcattctacacgaaacatttgtcaaatctgcgtcaatgctcaattccgacaaa
accaaaagttccacatccgaacgtaccatcctcaagaacctcgcatcgtggctcggccaa
ataactcttgctcgcgataaaccgatcaaacataaaaacctgtccttcaaggagtttctg
atcgagggagcggacagtgatcgactagtagtggcaattccatttgtctgcaaagttctt
gaaggagcggcaaaatcgaaggcttttcgtcctccaaacccgtggctcatggctgtcatc
agccttctcgcggagttatatcactttgccgagctcaaactgaacctgaaatttgagatc
gaagtgctctgcaaggcgctctccattgacctcgatactgtagaggttgcaaatattcta
cgcagccggccgcaagttgaaccaatggctgggcctggactacctgaaatgatgccaggt
atcgatgctttgcctattggcggttatgaacacgctggcgacggccaggtcatacccatc
ggtactaccagtggaccagaggctgaccgaactgtgggagctcacatagaagaaatatta
gccaacttggctacttccgtgataattaaccatcaactggctccactgcacacgaaccat
gcgtttaaacaggcagtccaagagggtattgatagggctgttcgggagatcattctacca
gttgtggagcgttccgttacgattgcaagcatcacgtctcgagagctttgtgtcaaggat
tttgcgtcagaaccgaacgaagagaaattacgcaaggctggtcatatggcttgtcaaaag
ctagcaggtagccttgcgcttgtgacttgcaaggatccgctccgaacaaacatggccgct
catatacggtcatatcttctggaccatggatttactgagcagatggtacccgaacaagtc
atcatgctgatcgttcaggataacattgatgtcgcctgtgaagcaatcgagaaggctgcc
atagaccgtgcaatcaaagaggtcgacgctgcacttgcacagtcgtacgatgctcgccgg
cgttaccgtgatgttcgctcaggtcaaagcttctgggatcctcttgccgttcaaagtgcc
tttatcgctggtcttcctgacccgctgcgcattaggccgaacggccttcaacctctccaa
cagcgcgtctatgaagagttcgcttttgacagcaagcgtcgtgttcctggtcgtccacct
tctatagtgcagtacgcgcgcaatgacgctcttcagcctacttattccccttcacccata
cctgaccaccaagtggctgtcgccaactctgcttacatggcacaggaacagttcaacatt
ttggtacagaaacttgagtcaattctgtctgagataccttacacttccctcgccctcgtc
ccttccaaccacgagcttcgtaacgtcgtcaatcgcgttctctccctagcgctcgagagt
aacgatcgtgtccgaacgcctctcttcatgtcgcaaaagatagtgcagcatctctataag
acaccgtctcagattgggcgggacatatatgttgctttacttgatcagctttgccagtcg
ttcgaggaggtggcaaaggaggcaataaactggcttatttgtgctgaggatgagcgcaaa
ttcaacatacctgccactgttacgttgttacggagccacctgataactccgactgacgag
gacatgcagctagctaaatggatatatgccagtgctaacagccgcccgagcttgcaagac
ttcgctgctggtctcatacgggaatgccttacaagcgagcctcccgttacaacgcaacac
caattccagtatactcttgatgctttgacacaacttgtgcgagcgagcaaagcaacagag
tctgtcatacagctgcttaatgagctggctggcttgccatctcaaccttcaaccgaaata
gttcctgccgttggacttcagccagtcaagcaagagacagaacaacttcaaattgtactg
ctcaagcgcttccagcagtgggtgggcattttccagtcctcctccaatccagagaagatg
ttcgtgcaatacgttactgcactgtcgaagcagggcatcctcaaggtagaagacatgtct
tctttcttcttccgtgtttgtgcagagtccagcattagccactacacgaagagcgttgct
gcgggtgactttggccactcgttcctggctttggatgccatgtcaagacttattgtctac
attatcaagtatcacggcgatgcttcgggaacaaacaatttacaggcaaaagtacactac
ttcacaaaaattctttcgatccttgtcctcgtcgttgctaataggcacgaagagcaaggc
ccagccttccagcagaagccatttttcaggttcttctcgagcctgttaagtgatctgtct
agtctcggagatcaactcgggaatgtgtatttccatttactggttgccttgagcgacacg
ttcagttccttgcagcccgtatatttcccaggatttgcattctcgtggatgactctgatc
tctcatcgcctgttcatgccaaagctgcttctctctgaaaatcgcgatggctggtctgcc
ttccataaactccttctcgctttgttcaagttcctggcaccaatgttgcgatcggcgaat
ttcacccttgcgtctcgcaatctttatcgcggtggccttcgtctccttctcgtgttgctc
cacgacttccccgatttcttgagcgcctattacttctccctttgcgatgtaatccctcct
cgctgcactcaacttcgcaacatcgtcctcagtgcgttccctgcgtccatcaccctgccc
gaccctagccttcgcaacacgaagtttgagacaattcccgaaatgggtccaattccactc
gtcctatccgacttttcggccatcctcaaaaacggcgatcttaagggttaccttgatcaa
tgccttctgagtcgtatgccgcagacctctttggcaacgttgaaggaacgcatgtgcctg
cctccgggtactgcaacaggcgaggaaacatacaatgtcccgttgataaacgcgatggtc
atgtacatcggtgtttcctcggttgcacaggttaaagcacgaagtggctcgtcagttttt
attccaaccgatccgggcgtggtcgctctgacctacctggcgtacaacctcgatccagaa
ggccaataccacttggctaacgcgatgattctccaactccgttacccgaacgcgcatacg
cattggttctgctgcctcatgctgtacctttttgagcatgctaaggacgatcgattccgg
gagatcatgaccagagtgcttatggaacggttctttgtgcaccgccctcacccctgggga
gcgctgctcaccttcattgagcttgtgcggaaccccaagtacgacttctggaacaaggac
ttcttgcgcgttgcgccagaggtcacggccattttggacaatgtatgttcctgcattccc
attgttccactgacgtctgctcattaa
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