Fusobacterium vincentii 3_1_36A2: HMPREF0946_01947
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Entry
HMPREF0946_01947 CDS
T02822
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fnc
Fusobacterium vincentii 3_1_36A2
Pathway
fnc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0946_01947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnc03021
]
HMPREF0946_01947
03400 DNA repair and recombination proteins [BR:
fnc03400
]
HMPREF0946_01947
Enzymes [BR:
fnc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0946_01947
Transcription machinery [BR:
fnc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0946_01947
DNA repair and recombination proteins [BR:
fnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0946_01947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF3052
Motif
Other DBs
NCBI-ProteinID:
EEU31539
UniProt:
C7XSI0
LinkDB
All DBs
Position
complement(2187868..2191422)
Genome browser
AA seq
1184 aa
AA seq
DB search
MQKLIERLDFGKIKPRGQMPHFLEFQLNSYEDFLQTNVSPNKREEKGFELAFKEIFPIES
SNGDVRLEYIGYELHEAEAPLNDELECKKRGKTYSNSLKVRLRLINKKMGNEIQESLVYF
GEVPKMTDRATFIINGAERVVVSQLHRSPGVSFSKEVNTQTGKDLFSGKIIPYKGTWLEF
ETDKNDFLSVKIDRKKKVLATVFLKAVDFFKDNNEIRDYFLETKELNLKTLYKKYSKEPE
ELLNVLKQELDGSIVKEDILDEETGEFIAETEAFINEEVINNLIENKVDKISYWYVGPES
KLVANTLMNDTTLTEDEAVVEVFKKLRPGDQVTVDSARSLIRQMFFNPQRYDLEPVGRYK
MNKRLKLDVPEEQISLTKEDVLGTIKYVIELNNGDQNVHTDDIDNLSNRRIRGVGELLLM
QIKTGLAKMNKMVREKMTTQDIETVTPQSLLNTRPLNALIQDFFGSGQLSQFMDQSNPLA
ELTHKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLATYAKIN
KYGFIETPYVKVENGVALVDDVRYLAADEEDGLFIAQADTKLDKNNKLQGLVVCRYGHEI
VEIEPERVNYMDVSPKQVVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLRSEAPFIGT
GLERKVAVDSGAVVTTKVSGKVTYVDGKKIIIEDKDKKEHIYRLLNYERSNQSMCLHQTP
LVDLGDKVKAGDIIADGPATKLGDLSLGRNILMGFMPWEGYNYEDAILISDRLRKDDVFT
SIHIEEYEIDARTTKLGDEEITREIPNVSESALRNLDENGVIMVGSEVGPGDILVGKTAP
KGETEPPAEEKLLRAIFGEKARDVRDTSLTMPHGSKGVVVDILELSRENGDELKAGVNKS
IRVLVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMNI
GQVLEVHLGMAMRSLNEGTCIATPVFDGATEEQVKDYLEKQGYPRTGKVTLYDGRTGEKF
DNKVTVGIMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAY
GASNILQEMLTVKSDDITGRTKTYEAIIKGEAMPESDLPESFKVLLKEFQALALDIELCD
EEDNVINVDEEIGIEDTPTEYSPQYEIEMTGLHEIDEDAEDFEE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaaactcattgaaagacttgattttggaaaaattaaacctaggggtcaaatgcct
cattttcttgaattccaattaaattcttatgaagattttttacaaactaatgtgtcccca
aataaaagagaggaaaaaggatttgaactagcattcaaagagatattcccaatagaatct
tcaaatggagatgtaaggctagaatatataggatatgaattacatgaagcagaagcacca
ttaaatgatgaacttgaatgtaaaaaaagaggtaagacatattctaattcattgaaagtt
agattaagacttataaacaaaaaaatgggaaatgaaatccaagaatctttggtatatttt
ggagaagttcctaaaatgacagatagagcaacatttataataaatggagcagaaagagtt
gttgtatctcaattacatagatcaccaggtgtatcttttagtaaagaagttaatactcaa
acaggtaaggatttattttctggaaaaataattccatataaaggaacttggttagaattt
gagactgataaaaatgactttttaagtgtaaagatagatagaaagaaaaaagttttagca
actgtatttttaaaagcagtagatttctttaaagataataatgaaattagagattatttc
ttagaaactaaggaattaaatttaaaaacactttataaaaaatattcaaaagaaccagaa
gaattattaaatgttttaaaacaagaattagatggctcaatagttaaagaagatatactt
gatgaagaaacaggagaatttattgctgaaacagaagcttttataaatgaagaagtaata
aataacttgatagaaaataaggtagataaaatttcttattggtatgtaggacctgaaagt
aaattagttgcaaatactttgatgaatgacacaactttaacagaggatgaagctgttgta
gaagtatttaaaaaattaagaccaggggatcaagtgactgttgactcggctagaagcttg
ataagacaaatgttctttaacccacaaagatatgatttagaacctgtgggaagatataag
atgaacaaaagattaaaacttgatgttccagaagaacaaatttcattgacaaaagaagat
gttttaggaactattaagtatgttatagaacttaataatggtgatcaaaatgttcatact
gatgatatagataacctatcaaataggcgtatcagaggagtaggagaattacttcttatg
caaatcaaaacaggacttgctaagatgaataaaatggttagagaaaaaatgactacacaa
gatatagaaacagtaactcctcagtcattgttgaatactagaccattaaatgctttaatc
caagatttctttggttcggggcaattatcacaatttatggatcaatcaaatccacttgct
gaattgacacataagagaagaatatcagcattaggacctggtggactttcaagagaaaga
gcaggatttgaagtaagagacgttcacgattctcactatggaagaatttgtccgatagaa
acaccagaaggaccaaatattggacttattggatcacttgctacttatgctaagattaat
aaatatggatttattgaaacaccttatgtaaaagtagaaaatggagtagcattagttgat
gatgttcgttatcttgcagctgatgaagaagatggattattcatagctcaagctgatact
aaacttgataaaaataataaattacaaggtttagtagtttgtagatatggacatgaaatt
gttgaaatagaacctgaaagagtaaactatatggatgtttctcctaaacaagtggtatct
gtatcagcagggcttataccattcttggaacatgacgatgccaacagagcattgatggga
tcaaacatgcaaagacaagctgtacctttattaagatcagaagctccttttatagggaca
gggcttgaaagaaaggttgcagtagattcaggtgcagtagtaaccacaaaagtatcagga
aaagtaacttatgtagatggtaaaaaaataataattgaagataaagataaaaaggaacat
atatatagacttttaaactatgaaagatctaaccaatcaatgtgtttacaccaaacaccg
ttggttgatttaggtgataaagtaaaagctggagatataattgcagatggacctgctaca
aaattaggagatttatcattaggaagaaatattcttatgggctttatgccatgggaagga
tataactatgaagatgctatcctaatttctgatagacttagaaaagatgatgtatttaca
tctatacatatagaagaatatgaaatagatgcaagaactacaaaattaggagatgaagaa
attacaagagaaattcctaatgtgtcagaaagcgctttaagaaacctagatgaaaatgga
gtaattatggtaggttcagaagtaggaccaggggatatattagttggtaagacagcacct
aagggagaaacagaaccacctgctgaagaaaaacttttaagagctatatttggagaaaaa
gcaagagatgtaagagatacatcacttactatgcctcatggctctaagggagttgttgtt
gatattcttgaactttcaagagaaaatggagatgaattaaaggcaggagtaaataaatct
ataagagttttagttgctgaaaaacgtaaaataactgttggggataagatgtcaggaaga
catggaaacaaaggggttgtttcaagagtattaccagcagaggatatgcctttcttagaa
gatggaactcacttagatgttgtattaaaccctcttggagtaccttctcgtatgaatata
gggcaagttcttgaagtacacttaggtatggcaatgagaagtctaaatgaaggaacttgt
atagctacaccagtatttgatggtgcaacagaagaacaagtaaaagattatcttgaaaaa
caaggatatccaagaacaggaaaagtaactttatacgatggaagaacaggagaaaagttt
gataataaagttacagttgggataatgtatatgttaaaattacaccatcttgttgaagat
aaaatgcatgctagagcaataggaccttattcattggtaactcaacaaccacttggaggt
aaggcacaatttggtggacaaagacttggagaaatggaagtttgggcgttggaagcttat
ggagcatctaatatacttcaagaaatgttaactgtaaaatcagacgatattacaggaaga
actaaaacttatgaagctataattaaaggtgaagctatgccagaatcagatttaccagaa
tcttttaaagtgcttttaaaagaattccaagcattagcactagatatagaattatgtgat
gaagaagacaatgttataaatgttgatgaagaaataggaatagaagatactccaacagaa
tactcaccacaatatgaaatagaaatgactgggcttcatgaaatagatgaagatgcggaa
gattttgaagagtaa
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