Flavobacterium nakdongensis: RF683_02510
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Entry
RF683_02510 CDS
T10681
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fnd Flavobacterium nakdongensis
Pathway
fnd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RF683_02510 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnd03021
]
RF683_02510 (rpoB)
03400 DNA repair and recombination proteins [BR:
fnd03400
]
RF683_02510 (rpoB)
Enzymes [BR:
fnd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RF683_02510 (rpoB)
Transcription machinery [BR:
fnd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RF683_02510 (rpoB)
DNA repair and recombination proteins [BR:
fnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RF683_02510 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Tudor_1_RapA
RnfC_N
SMUBP-2_HCS1_1B
AGA2
Motif
Other DBs
NCBI-ProteinID:
WMW78334
UniProt:
A0ABY9RBZ1
LinkDB
All DBs
Position
578172..581984
Genome browser
AA seq
1270 aa
AA seq
DB search
MIANQTERINFASTKNIPNYPDFLDIQVKSFRDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNQFVLEFLDYFIDPPRYTIEECIDRGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARIIPFKGSWIEF
ATDINNVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGIKKFIGRRL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILDKDNVEEILEADVKSILLHKEDNN
QADFAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGDV
GRYRMNKKLGLDIPMDKQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAK
VNGMGFIETPYRKVDNGKVDLVSEPIYLSAEEEEGKLIAQANITMDANGKITADKVIARE
EGDFPVVEPSAVHYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPQAP
IVGTGLERQVASDSRVLINAEGSGVVTYVDANMITIKYDRTEEERMVSFDEDEKTYQLIK
FRKTNQSTTINLKPIVRKGDKVVKGQVLCEGYATQNGELALGRNLQVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHVDDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVLDKKLFA
KAVKDKRKRTKDKEDLDKLEMEFEVKFNELKDKLIDKLFLIVDGKTSQGVLNDLGEEVLP
KGKKFTKKMLQAVEDFAHLTKGQWTTDEHTNSLINDLIHNYKIKLNDLQGVLRREKFTIT
VGDELPSGILKLAKVYIAKKRKLRVGDKMAGRHGNKGIVAKIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGLKLGKKFATPIFDGASLDEINEFTDEAGIPRFGHTY
LYDGGTGERFHQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVTGRAKTYEAIVKGETMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgattgctaatcagactgaaagaatcaattttgcctcaacgaaaaatattcctaattat
ccagattttcttgatatacaagtaaaatcatttagagattttttccagttagaaactaaa
tctgatgagagaggtaacgagggtctttacaacaccttcatggaaaattttccaataact
gatactagaaatcaattcgttctagagtttctagattattttattgatcctcctagatat
actatcgaagaatgtatcgatagaggcttgacgtatagtgtgcctctaaaagcacgttta
aaattatattgtacagatcctgaacatgaagattttgaaacaatagttcaagatgtttat
ttaggaactattccatacatgacgccaagcggaacatttgttattaatggcgcagaacgt
gttgtagtgtctcaattgcatagatcacctggagttttcttcggacaatctttccatgca
aatggaactaaattatattcagcaagaattataccttttaaaggttcttggattgaattt
gcaacagatatcaataacgtaatgtacgcgtacattgatagaaagaaaaaattacctgta
actactcttttcagagcgattggttttgaaagagataaagatattcttgaaatttttgat
cttgcagaagaaattaaagtttcaaaaacaggaatcaaaaaattcatcggtagaagatta
gctgctcgtgtgttaaatacttggcatgaagatttcgtggatgaggatacaggagaagta
gtatctattgagcgtaatgaaattattttagaccgtgatactatcttagataaagataat
gtagaagaaattttagaagcggatgtaaaatctattttattacacaaagaggataataat
caagcagattttgctattatccataatacattgcaaaaagaccctactaactctgaaaaa
gaggctgtagaacatatatatagacaattacgtaatgcagaaccacctgatgaggaaaca
gctcgtggtatcatcgataaattattcttctcagaccaacgttacaacttaggtgatgta
ggtcgttacagaatgaataaaaagttaggcttagatatcccgatggataaacaagtatta
acaaaagaagatattattacgattgtaaaatacttaattgaattaattaattcaaaagca
gaaattgatgatattgaccacttatcgaaccgtcgcgttagaactgtaggggaacaattg
tcagctcaatttggtgttggtttagcgcgtatggctcgtacaattcgtgaaagaatgaat
gtgcgtgataacgaagtgtttacaccaatcgatttgattaatgcaaaaacattatcatca
gtaattaattcattctttggaacaaaccagttgtctcagtttatggatcaaacgaatcca
ttagctgaaattacacacaaacgtcgtttgtcagctcttggacctggtggtttatcgaga
gaaagagcaggtttcgaggttcgtgacgttcactatacgcattatggtcgtttatgtcca
attgaaacacctgagggaccaaacattggtttgatttcatcattaggtgtgtatgctaaa
gtaaacggaatgggattcattgaaacaccatatcgtaaagttgataatggtaaagtggat
ttagtttcggaaccaatttatttaagcgcagaagaagaagaaggtaaattaattgcgcaa
gcaaatattaccatggatgcaaatggaaaaattactgcagataaagtaattgcaagagaa
gaaggagatttccctgtagtagagccaagtgctgtacattatacagacgttgcccctaat
caaattgcatctatttcagcttcattaattccattcttagagcatgatgatgcgaaccgt
gccttgatgggatctaacatgatgcgtcaggctgtacctcttttaagaccacaagcacct
attgtaggtactggtttagaaagacaagttgcgtctgattctagagtgttaattaatgcg
gaaggttctggagttgtaacttatgttgacgccaacatgattacaataaaatacgacaga
acagaggaagaaagaatggtaagttttgatgaagacgaaaaaacatatcaattaatcaaa
tttagaaaaacaaatcaaagtactacaattaacttaaaacctattgttagaaaaggagat
aaagtagtaaaaggtcaggtactttgtgaaggatatgctacacaaaacggagaattagct
ttaggtagaaatttacaagttgccttcatgccttggaaagggtataactttgaggatgca
attgtaatttctgaaaaagtagttcgtgatgatatttttacctctattcacgtagatgat
tattcattagaagttagagatacaaaattaggtaatgaagaattaactaatgatatccct
aatgtttctgaagaggctactaaagaccttgatgaaaatggtatgatcagaattggtgca
gaagtaaaacctggtgatatcttaattgggaaaattacacctaaaggagaatcagatcct
acaccagaagaaaaattattacgcgctatctttggagataaagcaggtgatgttaaagat
gcgtcattaaaagcttcaccttcattaaacggtgtggttttagataaaaaattatttgcg
aaagcagtaaaagataaacgcaaacgtactaaggataaagaagatttagataaacttgaa
atggaatttgaagtaaaattcaatgaacttaaagacaagttaatcgataaattattctta
attgttgacggaaaaacatctcaaggtgtacttaatgatttaggtgaagaagtattacca
aaaggtaaaaaattcactaaaaaaatgctacaagccgttgaagattttgctcatttaaca
aaagggcaatggacaactgacgagcatacaaactcattaattaacgacttaattcacaac
tataaaatcaaattaaatgatttacaaggggtattaagaagagagaaatttaccattaca
gtaggtgatgaattaccatcaggaatcttaaaattagctaaagtttatattgctaaaaaa
cgtaagctaagagtaggggataaaatggcaggacgtcacggaaataaaggtatcgttgca
aaaattgtacgtcaagaagatatgccattcttagaagatggaacaccagttgatatcgta
ttgaatccacttggagtaccttctcgtatgaacatcggacaaatttatgaaactgttctt
ggatgggcaggattaaaattagggaagaagtttgctacgccaatctttgacggtgcatca
ctagatgaaatcaatgaatttacagatgaagcgggaattcctagatttggtcatacgtat
ttgtatgatggaggaacaggagaacgtttccatcaagcagctactgtgggtgtaatttat
atgcttaaattaggtcacatggtagatgataaaatgcatgcacgttcaataggtccatac
tcattgattacacaacaaccattaggtggtaaagcacaatttggtggtcaacgtttcgga
gagatggaggtttgggcacttgaagcttatggtgcttctagtacgcttagagagatctta
acggttaaatctgatgacgtaacaggtagagcaaaaacttacgaagcaatcgttaaggga
gaaactatgccagaaccaggattacctgaatcattcaatgtattaatgcatgaattaaaa
ggtcttggattagacattagattagaagaataa
DBGET
integrated database retrieval system
