Flavobacterium nackdongense: E1750_14805
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Entry
E1750_14805 CDS
T06713
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fnk
Flavobacterium nackdongense
Pathway
fnk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E1750_14805 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnk03021
]
E1750_14805 (rpoB)
03400 DNA repair and recombination proteins [BR:
fnk03400
]
E1750_14805 (rpoB)
Enzymes [BR:
fnk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E1750_14805 (rpoB)
Transcription machinery [BR:
fnk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E1750_14805 (rpoB)
DNA repair and recombination proteins [BR:
fnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E1750_14805 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
AGA2
Motif
Other DBs
NCBI-ProteinID:
QBN20013
UniProt:
A0A4P6YHQ4
LinkDB
All DBs
Position
3440793..3444605
Genome browser
AA seq
1270 aa
AA seq
DB search
MITNQTERLNFASTKNIPQYPDFLDVQVKSFKDFFQLETKSDERGDEGLYNTFMENFPIT
DTRNNFVLEFLDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
STDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGLKKYIGRRL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTIIDKDNVEEIIDSNVKSILLHKEDSN
AVDYSIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRINKKLGLDTPMEKQVLTKEDIITIVKYLIELINAKADIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAK
VNGMGFIETPYRKVTKGVVDLESTPVYLSAEEEEGMMISQANIEMDAVGKILADNVIARQ
EGDFPVIDPSQVDYADVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAP
IVGTGLERQVASDSRVLINAEGPGTVEYVDANIITIKYDRSEEERMVSFEPDEKTYNLIK
FRKTNQSTSINLKPIVRKGDRVVLGQVLSEGYATQNGELALGRNLKVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHVDDYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFA
RAVKDKRKRTQDKDALGALEMEFETKFVELKDKLIEKLFLIVNGKTSQGVMNDLGEEVLP
KGKKYTQKMLYAVEDFAHLSTGQWVADETTNTMVNDLIHNYKIKLNDLQGSLRREKFTIT
VGDELPSGILKLAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQNLGRKFATPIFDGASLDEINALTDEAGVPRFGHTY
LYDGGTGERFAQKATVGVVYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGESMPEPGLPESFNVLMHELK
GLGLDLRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgataacaaatcagactgaaagattgaattttgcctccacaaaaaacattcctcaatac
ccagattttctggatgttcaggtaaaatcgtttaaagatttcttccaattggaaaccaaa
tctgacgaaagaggcgacgaagggttatacaacaccttcatggaaaacttcccaattaca
gatacaaggaataactttgtattagaatttcttgactactttgtagatccaccgcgttat
acaattcaagaatgtatcgaaagagggcttacctatagtgtgcctttaaaagcaagatta
aaactatattgtacagatccagagcacgaagattttgaaactattgttcaagatgtttat
ctaggaacaataccgtacatgactccttcaggtacttttgtaatcaatggtgccgagcgt
gttgttgtttctcaattgcaccgttcgcctggggttttctttggccaatcattccacgcc
aatggaacaaaactatattctgccagagtaattcctttcaaaggatcttggatagaattt
tcaaccgatatcaatagcgttatgtacgcttatatcgacagaaagaaaaaattacctgta
actactttattccgggctatcggtttcgaaagagataaggatatccttgagattttcgac
ctagccgaagaaattaaagtatctaaaacgggacttaaaaaatatatcggtagacgatta
gctgctcgtgttttgaacacttggcacgaagatttcgtggatgaagacactggcgaagtg
gtttctatcgaacgtaacgaaataatccttgaccgtgacacaattatcgacaaagataat
gtggaagaaatcattgattctaacgtaaaatctattttgttgcacaaagaagatagcaat
gcagttgattattctatcattcacaacacgcttcaaaaagatccaaccaattctgaaaaa
gaagccgttgagcacatctacagacaattgcgtaacgcagaaccgcctgatgaagaaact
gctcgtggcattatagataaattattcttctctgaccaacgttataacttaggtgaagta
ggtcgttatagaattaacaaaaaacttggtttggatactccaatggaaaagcaagtgctt
accaaagaagacatcattaccatagtgaaatatttgattgaattaataaatgcgaaagct
gatattgatgatatcgatcacttgtcaaaccgtcgtgttagaacagttggcgaacaactt
tctcaacaatttggtgttggtttggctcgtatggcaagaaccattcgcgagagaatgaac
gttagagataacgaggtgtttacaccgatcgatttgattaatgccaaaacattatcatcg
gtgatcaactctttctttggaacaaaccagttgtcacagtttatggatcaaacgaatcca
ttggccgagattacacacaaaagaaggttatctgcacttggaccaggtggactttcgaga
gagagagctggatttgaggttcgtgacgttcactatacgcactacggacgtttatgtcca
attgaaactcctgagggaccaaacattggtttgatttcatcgcttggtgtttatgctaaa
gttaacggaatgggtttcattgaaactccgtatcgtaaagtaacaaaaggggtggtagat
ttagaatcgactcctgtttacttgagcgcagaggaagaagaaggtatgatgatttcacaa
gcaaacattgaaatggatgctgttggaaaaattcttgccgacaacgtaattgcccgtcaa
gaaggggatttcccagtaatcgatccatcacaagtagattatgctgacgttgctcctaat
caaattgcttcgatttcagcttcattgattcctttcttggaacacgatgatgcgaataga
gcgttgatgggatcgaacatgatgcgtcaggccgtaccattattgcgtcctgaagctcct
attgttggaactggtttagagcgtcaagtagcttcagattctagagtcttaatcaatgct
gaaggacctggaactgtggaatatgtcgatgctaatatcatcaccatcaaatacgatcgt
tctgaagaagaaagaatggtaagttttgagcctgatgaaaaaacatacaatttaattaaa
tttagaaaaaccaatcaaagcacaagtatcaacttgaaacctatcgtaagaaaaggggac
agagtggtgctaggacaagtattatcagaaggatatgccacccaaaatggtgaattagct
ttaggtcgtaaccttaaagtagcgttcatgccttggaaagggtacaacttcgaggatgcg
attgtgatttctgaaaaagtagttcgtgacgatatatttacctctattcacgtcgatgat
tattcattggaagtgagagatactaaattaggtaacgaagaattaactaatgatattcca
aacgtttctgaagaagctaccaaagatttagatgaaaacggtatgattagaattggtgct
gaggtaaaacctggcgatattcttatcggaaaaattacaccaaaaggagaatctgatcca
actccagaagaaaaattgcttcgtgccatcttcggggataaagctggtgatgtgaaagat
gcttcattgaaagcgtctccatctttacacggtgtggttttagacaaaaaattgtttgca
agagcagtaaaagataaacgtaagagaacccaagataaagatgctttaggcgctttggaa
atggaattcgaaactaaatttgttgaattgaaagacaaattaattgagaaattgttctta
atcgtaaacggaaaaacctctcaaggtgtaatgaatgatttgggtgaagaagttttgcca
aaaggtaaaaaatacactcaaaaaatgctttatgctgtcgaagattttgctcacttgagt
acaggtcaatgggttgccgatgaaacaacgaatacaatggtgaatgatttgattcataac
tataaaattaagttgaacgatttacaaggttcattgcgtagagagaaattcacgattact
gtaggtgatgaattgccatcagggattttgaaattggctaaagtatatgttgccaaaaaa
cgtaaattgaaagttggggataaaatggcgggacgtcacggtaacaaaggtattgttgct
cgtattgttcgtcacgaggatatgcctttcttagaagatggaacacctgtggatattgtg
ttgaatccacttggggtaccttcgcgtatgaacattggtcagatttacgaaactgtttta
ggctgggctggacagaatttgggtagaaaatttgctactccaatttttgatggtgcctct
ttagacgaaataaatgcgttgactgatgaagcgggagtgccaagattcggacacacttat
ctatacgatggtgggactggtgagcgttttgcacagaaagcaactgttggagttgtttat
atgctgaaattaggtcacatggtcgatgataaaatgcacgcacgttcgatcggaccgtac
tctttgattacacaacaaccattgggtggtaaagctcaatttggtggtcagcgttttgga
gagatggaggtttgggcacttgaagcttatggagcatcaagtacacttcgtgaaattttg
actgtgaaatccgatgacgttattggtagagctaaaacctacgaagctatcgttaaggga
gaatctatgcctgaaccaggattgccggaatctttcaatgtgttgatgcacgaattgaaa
ggtcttggacttgaccttcgtttagaagaataa
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integrated database retrieval system
