Francisella orientalis LADL 07-285A: M973_09215
Help
Entry
M973_09215 CDS
T02952
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fnl
Francisella orientalis LADL 07-285A
Pathway
fnl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M973_09215 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnl03021
]
M973_09215 (rpoB)
03400 DNA repair and recombination proteins [BR:
fnl03400
]
M973_09215 (rpoB)
Enzymes [BR:
fnl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M973_09215 (rpoB)
Transcription machinery [BR:
fnl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M973_09215 (rpoB)
DNA repair and recombination proteins [BR:
fnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M973_09215 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-ProteinID:
AHB98907
LinkDB
All DBs
Position
complement(1683219..1687295)
Genome browser
AA seq
1358 aa
AA seq
DB search
MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLNANDAKGRLYSGLELVLKQSF
PVESKNGQYELHYVDYQVGESTFDETECQVRGATYDAPLNVKLRLVVYNKEALPGEKVVE
NIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGTFSARIIPYR
GSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEEILNKFSDSKTISFNNKGFALK
LDDLSNMKGEVLKFDIIDEKDNTIVKKNKKLTSRDIKKIKDAGVDSVAIDFDLVSTLRVA
KDIVNEVTGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTLKYDLTKN
TDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGSDKVSGDI
YTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE
SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGG
LSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRRVVNG
KVTNEIEYLSAIDEDHYVIAQASTKLDKNNHFVEDLIQCRSGGEAIFTESSRVQYMDVSA
KQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCII
ARNAGEIAEVDSNRIVVKVDTEKSQTSKLVDIYSLTKFKRSNKNTCINQRPIVDVGDKIE
AGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTC
VARDTKLGPEEVTADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPE
ERLLRAIFNEKASNVADSSLKMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARK
DFDEEFAVIESVVKSSIETDVVGAKIQKAKGLKKGAVLTKEFLATLPFSKWLEISFEAEK
LEQKIQNAREYYEEAKIAVDARFEAKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKM
AGRHGNKGVVSRVLPIEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGK
KVEQTLEKTRKAAELRKTLEEVYNSVGDKKVDLKALNDEEILNLCENLKGGVPIATPVFD
GAKEEDIKSLLKIGGFVTNGQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARST
GSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSDDITGRSKMYKNI
VDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactcatacgctgagaaaaaaagaattcgcaaagagtttggggttcttcctcat
atcttagatgtgccatatttactttccattcaaacagagtcatacaaaaagtttttaaat
gcaaatgatgcaaaaggtagactttactctggtcttgaattagtgcttaagcaatcattt
cctgttgaaagtaaaaatggtcaatatgaactgcattatgttgattatcaagttggtgag
tctacttttgatgaaacagagtgccaagtgcgcggtgccacatacgatgcaccattaaat
gtgaagttgagattggttgtatataataaagaggctcttcctggtgagaaagtcgtagaa
aatattagagaagaatatgtttatatgggcgatattcctcttatgacaactaatggtact
tttataattaatggtaccgaaagagtggttgtttcacagttgcatagatctcctggtgta
ttttttagtaaggatgattcagaggaaggaacattttcggcacgtattattccttataga
ggttcgtggcttgactttgagtttgactcaaaaggtatcatatgggctagaattgacaga
aaaagaaaattttgcgctacagtgattttaaaagctcttggatatacgcaagaggaaata
ttaaataaattctctgatagtaagacaataagttttaataataaaggttttgcacttaag
cttgatgatctttctaatatgaaaggcgaagtacttaagtttgatattattgatgaaaaa
gataatacgattgttaagaaaaataaaaaattaacatctagagatattaaaaaaattaaa
gacgcaggagttgactctgtagctattgattttgatttggttagcactcttagagtggcc
aaagatatcgttaatgaagtaacaggtgaagtgatagcttacgctaatgacgatgttaca
gaaagtttattagagtcatgcgtagaagttggcatgcttgaattagaagttattgatttt
ataactactgaaagaggtaggtatatatcagatactcttaagtatgatcttactaaaaat
acagatgaagcacttgtagaaatatataaagttcttagaccaggtgatcctccagcagca
gcttctgtgaaagctcttttcgagggactattctttattgaaagtagatatagcttatct
gatattggtagaatgaagctaaatgcaagattaggttctgataaggtatctggagatatt
tacactctagaaaatagtgatattgtaggtgttatcgaagagcttattaatatccgtgat
ggcaaaggtaaagtcgatgatatcgatcatctaggcaatagacgtgtgcgttctgttgga
gaaatggttgagaatcaatttagaataggtctttatcgtgtagagaaaggtattcgtgaa
agtatgtcgctagttcataaagacaagcttatgcctaaagatattgtgaactctaagcca
attacagcagcaattaaagaattctttacatctggtgctttatcgcagtttatggatcaa
gacaatccattatcagaggttactcataagcgtagaatttctgcattaggcccaggtggt
ttatcgcgtgatagagctggttttgaggttcgtgacgttcacgcaactcattatggtaga
ttgtgtcctattgagactccagaaggtccaaatattggtttgattaactcattggcaagt
tatgcacgagttaatgattatggcttcttagaagcaccatatagaagagtagttaatggt
aaagtgactaatgaaattgagtacttatcagctatcgatgaagatcattatgtgattgca
caagcatcaacaaaacttgataaaaataatcattttgtagaagatcttattcagtgtcgt
tcaggtggtgaagcaatatttactgagtcaagtagagtccagtatatggatgtctctgct
aagcagatggtttcagcagctgcagcattaataccattcttagagcatgatgatgctaac
agggtattgatgggtgcaaacatgcaacgtcaagcggtaccaactcttaaatctgaaaag
cctctggtaggtactggtatggaaaagattgttgctagagactccggcaactgtattatt
gcaagaaatgctggtgagatagcagaagttgattctaatagaatagttgttaaagttgat
actgaaaaatctcaaacaagtaagttagttgatatttacagcttgactaagtttaaacgc
tcaaacaaaaatacttgtatcaatcagcgtccaatagttgatgttggagataagattgag
gctggtgatattttggctgacggttttgcaactgattttggtgagttatcacttggtcat
aaccttatggttgctttcatgccgtggaatggttataactttgaggattcaattttactt
tctgaaagaatagtaaaagatgacaaatatactagtatccatattgaagagttcacatgt
gtggctcgtgatactaagctaggtcctgaagaagtaacggcagatattccaaatgtcagt
gagtcaagtcttgctaagcttgatgagtcaggtattgttcatattggtgcgaatgttgag
gcaggtgatattcttgtcgctaaaattacgccaaaagctgagcagcagttaactcctgaa
gaaagacttcttagagcgatctttaatgaaaaagcatcaaatgttgctgatagttcatta
aaaatgcctagtggtacttcaggaactgtaatcaatgttcaggtctttgagaatgataaa
ggtggtaagagcaaaagagctcttaaaattgagaaagaactaattgataaggcgcgtaaa
gatttcgatgaagaatttgctgtaattgaatctgtagttaaatcatcaatcgagacagat
gtggttggcgctaagatacaaaaagcaaaaggacttaagaaaggagctgttcttacaaaa
gaatttttagcaacgctacctttttctaagtggttagaaatctcttttgaagctgaaaaa
cttgagcaaaaaatacagaatgctagagagtattatgaagaagcaaaaatagctgtagat
gctagatttgaagctaagaaaaaatctatcacacaaagcaatgagctatctcctggtgta
cttaaaaccgttaaggtttttgttgcgattaaaaaacgtattcagccaggtgataaaatg
gctggacgtcatggtaacaaaggtgttgtttcaagagtactaccaattgaggatatgcca
tatatggaagatggtactccagtagatgtctgtttgaatccactaggtattccttcgcgt
atgaatatcggtcagattcttgaggctcacttaggattagcgtcttacggcttaggtaag
aaagtagagcaaactctagaaaaaacaagaaaagcagcagagttaagaaaaactctagaa
gaagtctataacagtgttggtgataaaaaagttgatcttaaggctttaaatgacgaagag
atactgaatctttgtgaaaatctaaaagggggagtaccaattgcaactcctgtatttgat
ggtgcaaaagaggaagatattaagtctttactaaaaataggaggctttgtaactaatggt
cagatgaaattgtttgatggtcgtactggtaagccatttgataggcatgtaaccgttggt
tatatgtatatgcttaagttagaccacttggtagatgataaaatgcatgctagatcaact
ggatcttacagtctagttacgcagcaaccgttaggtggtaaagcgcaatttggtggtcaa
agattcggtgagatggaagtttgggcgttacaagcatatggtgctgcttatactctaaga
gagatgttaacggttaagtcagatgatataactggtagatctaagatgtataagaatata
gttgatggtaagttaactatgaatgtagatgttccagaatcatttaatgttttaagaaat
gaagttagagcattgggaatagatatggattttgactactcatctgaggaagaataa
DBGET
integrated database retrieval system
